8HVQ

Crystal structure of haloacid dehalogenase-like hydrolase family enzyme from Staphylococcus lugdunensis

PDB DOI: https://doi.org/10.2210/pdb8HVQ/pdb

Classification: HYDROLASE
Organism(s): Staphylococcus lugdunensis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-12-27 Released: 2023-12-27
Deposition Author(s): Kaur, H., Mahto, J.K., Kumar, P., Sharma, A.K.
Funding Organization(s): Department of Science & Technology (DST, India)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.73 Å
R-Value Free: 0.199
R-Value Work: 0.151
R-Value Observed: 0.153

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of haloacid dehalogenase-like hydrolase family enzyme from Staphylococcus lugdunensis

Kaur, H., Mahto, J.K., Kumar, P., Sharma, A.K.

To be published.

Macromolecule Content

Total Structure Weight: 53.13 kDa
Atom Count: 4,392
Modelled Residue Count: 460
Deposited Residue Count: 466
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cof-type HAD-IIB family hydrolase	A, B	233	Staphylococcus lugdunensis	Mutation(s): 0 Gene Names: EQ812_11540
UniProt
Find proteins for A0A133Q9P0 (Staphylococcus lugdunensis) Explore A0A133Q9P0 Go to UniProtKB: A0A133Q9P0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A133Q9P0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
OXM Query on OXM Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain I [auth B] MOL2 format, chain E [auth A] MOL2 format, chain I [auth B]	E [auth A], I [auth B]	OXAMIC ACID C₂ H₃ N O₃ SOWBFZRMHSNYGE-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Focus chain I [auth B] Interactions & Density Focus chain E [auth A] Focus chain I [auth B]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain G [auth A] SDF format, chain H [auth B] SDF format, chain J [auth B] SDF format, chain K [auth B] MOL2 format, chain D [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth B] MOL2 format, chain J [auth B] MOL2 format, chain K [auth B]	D [auth A], G [auth A], H [auth B], J [auth B], K [auth B]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain J [auth B] Focus chain K [auth B] Interactions & Density Focus chain D [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain J [auth B] Focus chain K [auth B]
FMT Query on FMT Download Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A]	F [auth A]	FORMIC ACID C H₂ O₂ BDAGIHXWWSANSR-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Interactions & Density Focus chain F [auth A]