8HOB | pdb_00008hob

The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum ( variant)

PDB DOI: https://doi.org/10.2210/pdb8HOB/pdb
EM Map EMD-34924: EMDB EMDataResource

Classification: TRANSFERASE
Organism(s): Acetivibrio thermocellus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2022-12-09 Released: 2024-03-20
Deposition Author(s): Iriya, S., Kuga, T., Sunagawa, N., Igarashi, K.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8HOB

This is version 1.0 of the entry. See complete history.

Literature

The cryo-EM structure of cellobiose phosphorylase from Clostridium thermocellum

Iriya, S., Kuga, T., Sunagawa, N., Igarashi, K.

To be published.

Macromolecule Content

Total Structure Weight: 187.95 kDa
Atom Count: 13,449
Modeled Residue Count: 1,622
Deposited Residue Count: 1,640
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cellobiose phosphorylase	A, B	820	Acetivibrio thermocellus	Mutation(s): 9 Gene Names: cbp EC: 2.4.1.20
UniProt
Find proteins for A3DC35 (Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)) Explore A3DC35 Go to UniProtKB: A3DC35
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A3DC35
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.19 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	3.3.2

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-03-20

Deposition Author(s):

Funding Organization	Location	Grant Number
Japan Society for the Promotion of Science (JSPS)	Japan	22J12566

Revision History (Full details and data files)

Version 1.0: 2024-03-20
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.