8HFW | pdb_00008hfw

The crystal structure of alpha/beta fold hydrolase

PDB DOI: https://doi.org/10.2210/pdb8HFW/pdb

Classification: HYDROLASE
Organism(s): Burkholderia pyrrocinia
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-11-12 Released: 2023-05-24
Deposition Author(s): Lu, H., Xu, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free:
0.229 (Depositor), 0.219 (DCC)
R-Value Work:
0.194 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of alpha/beta fold hydrolase

Lu, H., Xu, Y.

To be published.

Macromolecule Content

Total Structure Weight: 97.21 kDa
Atom Count: 6,318
Modeled Residue Count: 846
Deposited Residue Count: 912
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha/beta fold hydrolase	A, B, C	304	Burkholderia pyrrocinia	Mutation(s): 0 Gene Names: EVG18_06755
UniProt
Find proteins for A0AA82WPH3 (Burkholderia pyrrocinia) Explore A0AA82WPH3 Go to UniProtKB: A0AA82WPH3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0AA82WPH3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free: 0.229 (Depositor), 0.219 (DCC)
R-Value Work: 0.194 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 166.96	α = 90
b = 68.41	β = 93.575
c = 75.34	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
BALBES	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-05-24

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31830069

Revision History (Full details and data files)

Version 1.0: 2023-05-24
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.