Structural Evidence for Protein Binding by the Methyl-CpG-Binding Domain of SETDB Proteins
Mahana, Y., Ariyoshi, M., Nagao, K., Obuse, C., Shirakawa, M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ARL14 effector protein | A, C [auth B] | 77 | Homo sapiens | Mutation(s): 0  Gene Names: ARL14EP, ARF7EP, C11orf46 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8N8R7 (Homo sapiens) Explore Q8N8R7  Go to UniProtKB:  Q8N8R7 | |||||
PHAROS:  Q8N8R7 GTEx:  ENSG00000152219  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8N8R7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone-lysine N-methyltransferase SETDB2 | B [auth C], D | 108 | Homo sapiens | Mutation(s): 0  Gene Names: SETDB2, C13orf4, CLLD8, KMT1F EC: 2.1.1.366 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96T68 (Homo sapiens) Explore Q96T68  Go to UniProtKB:  Q96T68 | |||||
PHAROS:  Q96T68 GTEx:  ENSG00000136169  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96T68 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | G [auth A] I [auth C] J [auth C] M [auth B] N [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
ZN Query on ZN | E [auth A] F [auth A] H [auth C] K [auth B] L [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.97 | α = 90 |
b = 69.97 | β = 90 |
c = 116.88 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Coot | model building |
BUCCANEER | model building |
SHELXCD | phasing |
Aimless | data scaling |
XDS | data reduction |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science (JSPS) | Japan | 21K06048 |