8HEL | pdb_00008hel

Crystal Structure of Anti-CRISPR AcrIE3

PDB DOI: https://doi.org/10.2210/pdb8HEL/pdb

Classification: VIRAL PROTEIN
Organism(s): Pseudomonas phage DMS3
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-11-08 Released: 2024-05-08
Deposition Author(s): Koo, J., Bae, E.
Funding Organization(s): Rural Development Administration, National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.33 Å
R-Value Free:
0.229 (Depositor), 0.230 (DCC)
R-Value Work:
0.191 (Depositor), 0.190 (DCC)
R-Value Observed:
0.194 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural and biochemical insights into the mechanism of the anti-CRISPR protein AcrIE3

Koo, J., Lee, G., Park, C., Oh, H., Hong, S.H., Suh, J.Y., Bae, E.

(2024) Structure

DOI: https://doi.org/10.1016/j.str.2024.10.024

Macromolecule Content

Total Structure Weight: 8.85 kDa
Atom Count: 663
Modeled Residue Count: 68
Deposited Residue Count: 76
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AcrIE3	A	76	Pseudomonas phage DMS3	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.33 Å
R-Value Free: 0.229 (Depositor), 0.230 (DCC)
R-Value Work: 0.191 (Depositor), 0.190 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.353	α = 90
b = 58.353	β = 90
c = 90.633	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data scaling
HKL-2000	data collection
HKL-2000	data scaling
PHENIX	model building
PHENIX	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-08

Deposition Author(s):

Funding Organization	Location	Grant Number
Rural Development Administration	United States	PJ01653401
National Research Foundation (NRF, Korea)	Korea, Republic Of	R1A4A1018890

Revision History (Full details and data files)

Version 1.0: 2024-05-08
Type: Initial release
Version 1.1: 2024-11-20
Changes: Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.