8HBN

Structure of the Mex67-Mtr2-1 heterodimer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.81 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Nuclear export of pre-60S particles through the nuclear pore complex.

Li, Z.Chen, S.Zhao, L.Huang, G.Xu, H.Yang, X.Wang, P.Gao, N.Sui, S.F.

(2023) Nature 618: 411-418

  • DOI: https://doi.org/10.1038/s41586-023-06128-y
  • Primary Citation of Related Structures:  
    8HBN, 8HFR

  • PubMed Abstract: 

    The nuclear pore complex (NPC) is the bidirectional gate that mediates the exchange of macromolecules or their assemblies between nucleus and cytoplasm 1-3 . The assembly intermediates of the ribosomal subunits, pre-60S and pre-40S particles, are among the largest cargoes of the NPC and the export of these gigantic ribonucleoproteins requires numerous export factors 4,5 . Here we report the cryo-electron microscopy structure of native pre-60S particles trapped in the channel of yeast NPCs. In addition to known assembly factors, multiple factors with export functions are also included in the structure. These factors in general bind to either the flexible regions or subunit interface of the pre-60S particle, and virtually form many anchor sites for NPC binding. Through interactions with phenylalanine-glycine (FG) repeats from various nucleoporins of NPC, these factors collectively facilitate the passage of the pre-60S particle through the central FG repeat network of the NPC. Moreover, in silico analysis of the axial and radial distribution of pre-60S particles within the NPC shows that a single NPC can take up to four pre-60S particles simultaneously, and pre-60S particles are enriched in the inner ring regions close to the wall of the NPC with the solvent-exposed surface facing the centre of the nuclear pore. Our data suggest a translocation model for the export of pre-60S particles through the NPC.


  • Organizational Affiliation

    School of Life Sciences, Southern University of Science and Technology, Shenzhen, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
mRNA export factor MEX67599Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MEX67YPL169CP2520
UniProt
Find proteins for Q99257 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q99257 
Go to UniProtKB:  Q99257
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99257
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
mRNA transport regulator MTR2184Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MTR2YKL186C
UniProt
Find proteins for P34232 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P34232 
Go to UniProtKB:  P34232
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP34232
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.81 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-12
    Type: Initial release
  • Version 1.1: 2023-06-07
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Database references
  • Version 1.3: 2023-06-21
    Changes: Database references
  • Version 1.4: 2023-06-28
    Changes: Database references