8HAU | pdb_00008hau

NARROW LEAF 1 from Indica

PDB DOI: https://doi.org/10.2210/pdb8HAU/pdb
EM Map EMD-34609: EMDB EMDataResource

Classification: SURFACTANT PROTEIN
Organism(s): Oryza sativa Indica Group
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-10-26 Released: 2024-06-05
Deposition Author(s): Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.
Funding Organization(s): Chinese Academy of Sciences

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8HAU

This is version 1.0 of the entry. See complete history.

Literature

NARROW LEAF 1 from Indica

Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.

To be published.

Macromolecule Content

Total Structure Weight: 240.25 kDa
Atom Count: 16,157
Modeled Residue Count: 2,080
Deposited Residue Count: 2,172
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein NARROW LEAF 1	A, B, C, D, E A, B, C, D, E, F	362	Oryza sativa Indica Group	Mutation(s): 0 Gene Names: OsI_17391
UniProt
Find proteins for A2XXI5 (Oryza sativa subsp. indica) Explore A2XXI5 Go to UniProtKB: A2XXI5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A2XXI5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ATP Query on ATP Download:Ideal Coordinates CCD File SDF format, chain L [auth F] SDF format, chain K [auth E] SDF format, chain J [auth D] SDF format, chain I [auth C] SDF format, chain H [auth B] SDF format, chain G [auth A] MOL2 format, chain L [auth F] MOL2 format, chain K [auth E] MOL2 format, chain J [auth D] MOL2 format, chain I [auth C] MOL2 format, chain H [auth B] MOL2 format, chain G [auth A] mmCIF format, chain L [auth F] mmCIF format, chain K [auth E] mmCIF format, chain J [auth D] mmCIF format, chain I [auth C] mmCIF format, chain H [auth B] mmCIF format, chain G [auth A]	G [auth A] H [auth B] I [auth C] J [auth D] K [auth E] G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F]	ADENOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ ZKHQWZAMYRWXGA-KQYNXXCUSA-N		Interactions Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth D] Focus chain K [auth E] Focus chain L [auth F] Interactions & Density Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth D] Focus chain K [auth E] Focus chain L [auth F]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.02 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	cryoSPARC	4.0.2
RECONSTRUCTION	cryoSPARC	4.0.2

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-06-05

Deposition Author(s):

Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	XDA24020103-2

Revision History (Full details and data files)

Version 1.0: 2024-06-05
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.