8HAT | pdb_00008hat

NARROW LEAF 1-open from Japonica

• PDB DOI: https://doi.org/10.2210/pdb8HAT/pdb
• EM Map EMD-34608: EMDB EMDataResource

• Classification: SURFACTANT PROTEIN
• Organism(s): Oryza sativa Japonica Group
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-10-26 Released: 2024-06-12 
• Deposition Author(s): Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.
• Funding Organization(s): Chinese Academy of Sciences

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.03 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

NARROW LEAF 1-open from Japonica

Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 268.1 kDa 
• Atom Count: 16,967 
• Modeled Residue Count: 2,206 
• Deposited Residue Count: 2,454 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein NARROW LEAF 1	A [auth F], B [auth D], C [auth E], D [auth A], E [auth B], F [auth C]	409	Oryza sativa Japonica Group	Mutation(s): 0  Gene Names: NAL1, GFP, LSCHL4, SPIKE, Os04g0615000, LOC_Os04g52479, OsJ_16147
UniProt
Find proteins for B4XT64 (Oryza sativa subsp. japonica) Explore B4XT64  Go to UniProtKB:  B4XT64

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.03 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.0.2
MODEL REFINEMENT	cryoSPARC	4.0.2
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-06-12 
Deposition Author(s): Zhang, S.J., He, Y.J., Wang, N., Zhang, W.J., Liu, C.M.

---

Funding Organization	Location	Grant Number
Chinese Academy of Sciences	China	XDA24020103-2

Revision History  

• Version 1.0: 2024-06-12
  Type: Initial release
  
• Version 1.1: 2025-07-23
  Changes: Data collection, Structure summary