8H0G | pdb_00008h0g

AQEE-30 in a HFIP solution


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Structure of AQEE-30 of VGF Neuropeptide in Membrane-Mimicking Environments.

Park, O.S.Bang, J.K.Cheong, C.Jeon, Y.H.

(2022) Int J Mol Sci 23

  • DOI: https://doi.org/10.3390/ijms232213953
  • Primary Citation Related Structures: 
    8H0G, 8H0U

  • PubMed Abstract: 

    AQEE-30 is one of the VGF peptides, which are derived from the VGF polypeptide precursor, and related to various physiological phenomena including neuroprotective effects in Huntington's disease and amyotrophic lateral sclerosis (ALS). Although various functions of AQEE-30 have been reported so far, the structure of this peptide has not been reported yet. In this study, the structure of human AQEE-30 was investigated in hexafluoroisopropanol (HFIP) and dodecyl phosphocholine (DPC) micelle solutions, using circular dichroism (CD) and nuclear magnetic resonance (NMR) spectroscopy. CD results showed that AQEE-30 had a partial helical structure in aqueous buffer, and the helical structure was stabilized in the HFIP and DPC micelle solutions. The 3D structures determined by NMR spectroscopy showed that AQEE-30 adopted mainly α-helical structure in both the HFIP and DPC micelle solutions. The surface of AQEE-30 showed that it was predominantly negatively charged. The residues from 601 to 611 in both the HFIP and DPC micelle solutions showed amphiphilicity with four negatively charged residues, glutamate. The C-terminal consecutive arginine residues formed a partial positively charged surface. These results suggest an α-helical active structure of AQEE-30 in the cell-membrane environment.


  • Organizational Affiliation
    • College of Pharmacy, Korea University Sejong Campus, Sejong 30019, Korea.

Macromolecule Content 

  • Total Structure Weight: 3.8 kDa 
  • Atom Count: 266 
  • Modeled Residue Count: 31 
  • Deposited Residue Count: 31 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
AQEE-3031Homo sapiensMutation(s): 0 
Gene Names: VGF
UniProt & NIH Common Fund Data Resources
Find proteins for O15240 (Homo sapiens)
Explore O15240 
Go to UniProtKB:  O15240
PHAROS:  O15240
GTEx:  ENSG00000128564 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15240
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2020M3E5E2039159
National Research Foundation (NRF, Korea)Korea, Republic Of2017R1A2B4012546

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-14
    Type: Initial release
  • Version 1.1: 2024-05-15
    Changes: Data collection, Database references