8GY0

Agrocybe pediades linalool sunthase (Ap.LS)

PDB DOI: https://doi.org/10.2210/pdb8GY0/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Agrocybe pediades
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-09-21 Released: 2023-04-12
Deposition Author(s): Rehka, T., Sharma, D., Lin, F., Lim, C., Choong, Y.K., Chacko, J., Zhang, C.
Funding Organization(s): Other government, Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free: 0.275
R-Value Work: 0.214

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural Understanding of Fungal Terpene Synthases for the Formation of Linear or Cyclic Terpene Products.

Rehka, T., Sharma, D., Lin, F., Choong, Y.K., Lim, C., Jobichen, C., Zhang, C.

(2023) ACS Catal 13: 4949-4959

DOI: https://doi.org/10.1021/acscatal.2c05598

Macromolecule Content

Total Structure Weight: 74.88 kDa
Atom Count: 5,129
Modelled Residue Count: 628
Deposited Residue Count: 650
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Terpene synthase	A [auth B], B [auth A]	325	Agrocybe pediades	Mutation(s): 0 Gene Names: D9613_012268 EC: 4.2.3
UniProt
Find proteins for A0A8H4VHP2 (Agrocybe pediades) Explore A0A8H4VHP2 Go to UniProtKB: A0A8H4VHP2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8H4VHP2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free: 0.275
R-Value Work: 0.214
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.925	α = 90
b = 80.665	β = 96.05
c = 69.906	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MADSYS	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-04-12

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	Singapore	A2084c0064
Other private	Singapore	ASTAR

Revision History (Full details and data files)

Version 1.0: 2023-04-12
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.