8GNN

Crystal structure of the human RAD9-RAD1-HUS1-RAD17 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.219 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The 9-1-1 DNA clamp subunit RAD1 forms specific interactions with clamp loader RAD17, revealing functional implications for binding-protein RHINO.

Hara, K.Hishiki, A.Hoshino, T.Nagata, K.Iida, N.Sawada, Y.Ohashi, E.Hashimoto, H.

(2023) J Biol Chem 299: 103061-103061

  • DOI: https://doi.org/10.1016/j.jbc.2023.103061
  • Primary Citation of Related Structures:  
    8GNN

  • PubMed Abstract: 

    The RAD9-RAD1-HUS1 complex (9-1-1) is a eukaryotic DNA clamp with a crucial role at checkpoints for DNA damage. The ring-like structure of 9-1-1 is opened for loading onto 5' recessed DNA by the clamp loader RAD17 RFC-like complex (RAD17-RLC), in which the RAD17 subunit is responsible for specificity to 9-1-1. Loading of 9-1-1 is required for activation of the ATR-CHK1 checkpoint pathway and the activation is stimulated by a 9-1-1 interacting protein, RHINO, which interacts with 9-1-1 via a recently identified RAD1-binding motif. This discovery led to the hypothesis that other interacting proteins may contain a RAD1-binding motif as well. Here, we show that vertebrate RAD17 proteins also have a putative RAD1-binding motif in their N-terminal regions, and we report the crystal structure of human 9-1-1 bound to a human RAD17 peptide incorporating the motif at 2.1 Å resolution. Our structure confirms that the N-terminal region of RAD17 binds to the RAD1 subunit of 9-1-1 via specific interactions. Furthermore, we show that the RAD1-binding motif of RHINO disturbs the interaction of the N-terminal region of RAD17 with 9-1-1. Our results provide deeper understanding of how RAD17-RLC specifically recognizes 9-1-1 and imply that RHINO has a functional role in 9-1-1 loading/unloading and checkpoint activation.


  • Organizational Affiliation

    School of Pharmaceutical Sciences, University of Shizuoka, Shizuoka, Japan.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cell cycle checkpoint control protein RAD9A270Homo sapiensMutation(s): 0 
Gene Names: RAD9A
EC: 3.1.11.2
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Find proteins for Q99638 (Homo sapiens)
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Go to UniProtKB:  Q99638
PHAROS:  Q99638
GTEx:  ENSG00000172613 
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UniProt GroupQ99638
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Checkpoint protein HUS1286Homo sapiensMutation(s): 0 
Gene Names: HUS1
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Find proteins for O60921 (Homo sapiens)
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PHAROS:  O60921
GTEx:  ENSG00000136273 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cell cycle checkpoint protein RAD1282Homo sapiensMutation(s): 0 
Gene Names: RAD1REC1
EC: 3.1.11.2
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Find proteins for O60671 (Homo sapiens)
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PHAROS:  O60671
GTEx:  ENSG00000113456 
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  • Reference Sequence

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Cell cycle checkpoint protein RAD1711Homo sapiensMutation(s): 0 
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Find proteins for O75943 (Homo sapiens)
Explore O75943 
Go to UniProtKB:  O75943
PHAROS:  O75943
GTEx:  ENSG00000152942 
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UniProt GroupO75943
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.219 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 53.188α = 90
b = 136.303β = 90
c = 154.046γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
Cootmodel building

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-08
    Type: Initial release
  • Version 1.1: 2023-04-12
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Data collection, Refinement description