8GH4

Complex of Adam 10 disentegrin cysteine rich domains with human monoclonal antibody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.80 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.288 
  • R-Value Observed: 0.289 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Fully human monoclonal antibody targeting activated ADAM10 on colorectal cancer cells.

Saha, N.Baek, D.S.Mendoza, R.P.Robev, D.Xu, Y.Goldgur, Y.De La Cruz, M.J.de Stanchina, E.Janes, P.W.Xu, K.Dimitrov, D.S.Nikolov, D.B.

(2023) Biomed Pharmacother 161: 114494-114494

  • DOI: https://doi.org/10.1016/j.biopha.2023.114494
  • Primary Citation of Related Structures:  
    8GH4

  • PubMed Abstract: 

    Metastasis and chemoresistance in colorectal cancer are mediated by certain poorly differentiated cancer cells, known as cancer stem cells, that are maintained by Notch downstream signaling initiated upon Notch cleavage by the metalloprotease ADAM10. It has been shown that ADAM10 overexpression correlates with aberrant signaling from Notch, erbBs, and other receptors, as well as a more aggressive metastatic phenotype, in a range of cancers including colon, gastric, prostate, breast, ovarian, uterine, and leukemia. ADAM10 inhibition, therefore, stands out as an important and new approach to deter the progression of advanced CRC. For targeting the ADAM10 substrate-binding region, which is located outside of the catalytic domain of the protease, we generated a human anti-ADAM10 monoclonal antibody named 1H5. Structural and functional characterization of 1H5 reveals that it binds to the substrate-binding cysteine-rich domain and recognizes an activated ADAM10 conformation present on tumor cells. The mAb inhibits Notch cleavage and proliferation of colon cancer cell lines in vitro and in mouse models. Consistent with its binding to activated ADAM10, the mAb augments the catalytic activity of ADAM10 towards small peptide substrates in vitro. Most importantly, in a mouse model of colon cancer, when administered in combination with the therapeutic agent Irinotecan, 1H5 causes highly effective tumor growth inhibition without any discernible toxicity effects. Our singular approach to target the ADAM10 substrate-binding region with therapeutic antibodies could overcome the shortcomings of previous intervention strategies of targeting the protease active site with small molecule inhibitors that exhibit musculoskeletal toxicity.


  • Organizational Affiliation

    Structural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, United States. Electronic address: sahan@mskcc.org.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody heavy chainA [auth H]225Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody light chainB [auth L]214Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Disintegrin and metalloproteinase domain-containing protein 10C [auth E]196Bos taurusMutation(s): 0 
Gene Names: ADAM10MADM
EC: 3.4.24.81
UniProt
Find proteins for Q10741 (Bos taurus)
Explore Q10741 
Go to UniProtKB:  Q10741
Entity Groups  
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UniProt GroupQ10741
Sequence Annotations
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  • Reference Sequence
Oligosaccharides

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Entity ID: 4
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseD [auth F]2N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.80 Å
  • R-Value Free: 0.311 
  • R-Value Work: 0.288 
  • R-Value Observed: 0.289 
  • Space Group: P 21 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.578α = 90
b = 85.69β = 90
c = 129.934γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)United StatesR21AG08068501

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-30
    Type: Initial release