8G8W

Molecular mechanism of nucleotide inhibition of human uncoupling protein 1

PDB DOI: https://doi.org/10.2210/pdb8G8W/pdb
EM Map EMD-29857: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens, synthetic construct, Escherichia coli K-12
Expression System: Saccharomyces cerevisiae, Escherichia coli
Mutation(s): No
Membrane Protein: Yes PDBTMmpstruc

Deposited: 2023-02-20 Released: 2023-06-07
Deposition Author(s): Gogoi, P., Jones, S.A., Ruprecht, J.J., King, M.S., Lee, Y., Zogg, T., Pardon, E., Chand, D., Steimle, S., Copeman, D., Cotrim, C.A., Steyaert, J., Crichton, P.G., Moiseenkova-Bell, V., Kunji, E.R.S.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Medical Research Council (MRC, United Kingdom), Biotechnology and Biological Sciences Research Council (BBSRC), European Union (EU), Research Foundation - Flanders (FWO)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Macromolecule Content

Total Structure Weight: 146.1 kDa
Atom Count: 6,471
Modelled Residue Count: 902
Deposited Residue Count: 1,294
Unique protein chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial brown fat uncoupling protein 1	A	310	Homo sapiens	Mutation(s): 0 Gene Names: UCP1, SLC25A7, UCP Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P25874 (Homo sapiens) Explore P25874 Go to UniProtKB: P25874
PHAROS: P25874 GTEx: ENSG00000109424
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P25874
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Pro-macrobody 71, Maltose/maltodextrin-binding periplasmic protein chimera	B	490	synthetic construct, Escherichia coli K-12 This entity is chimeric	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Explore P0AEX9 Go to UniProtKB: P0AEX9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AEX9
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Pro-Macrobody 65, Maltose/maltodextrin-binding periplasmic protein chimera	C	494	synthetic construct, Escherichia coli K-12 This entity is chimeric	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Explore P0AEX9 Go to UniProtKB: P0AEX9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0AEX9
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Help

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose	D	2		N/A	Interactions Focus chain D Interactions & Density Focus chain D
Glycosylation Resources
GlyTouCan: G07411ON GlyCosmos: G07411ON

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CDL Query on CDL Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A]	F [auth A], G [auth A], H [auth A]	CARDIOLIPIN C₈₁ H₁₅₆ O₁₇ P₂ XVTUQDWPJJBEHJ-KZCWQMDCSA-L		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A]
GTP (Subject of Investigation/LOI) Query on GTP Download Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A]	E [auth A]	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-06-07

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM144120
Medical Research Council (MRC, United Kingdom)	United Kingdom	MC_UU_00028/2
Medical Research Council (MRC, United Kingdom)	United Kingdom	MC_UU_00015/1
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BB/S00940X/1
European Union (EU)	European Union	Instruct-ERIC/ESFRI
Research Foundation - Flanders (FWO)	Belgium	--