8G1U

Structure of the methylosome-Lsm10/11 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

In vitro methylation of the U7 snRNP subunits Lsm11 and SmE by the PRMT5/MEP50/pICln methylosome.

Yang, X.C.Desotell, A.Lin, M.H.Paige, A.S.Malinowska, A.Sun, Y.Aik, W.S.Dadlez, M.Tong, L.Dominski, Z.

(2023) RNA 29: 1673-1690

  • DOI: https://doi.org/10.1261/rna.079709.123
  • Primary Citation of Related Structures:  
    8G1U

  • PubMed Abstract: 

    U7 snRNP is a multisubunit endonuclease required for 3' end processing of metazoan replication-dependent histone pre-mRNAs. In contrast to the spliceosomal snRNPs, U7 snRNP lacks the Sm subunits D1 and D2 and instead contains two related proteins, Lsm10 and Lsm11. The remaining five subunits of the U7 heptameric Sm ring, SmE, F, G, B, and D3, are shared with the spliceosomal snRNPs. The pathway that assembles the unique ring of U7 snRNP is unknown. Here, we show that a heterodimer of Lsm10 and Lsm11 tightly interacts with the methylosome, a complex of the arginine methyltransferase PRMT5, MEP50, and pICln known to methylate arginines in the carboxy-terminal regions of the Sm proteins B, D1, and D3 during the spliceosomal Sm ring assembly. Both biochemical and cryo-EM structural studies demonstrate that the interaction is mediated by PRMT5, which binds and methylates two arginine residues in the amino-terminal region of Lsm11. Surprisingly, PRMT5 also methylates an amino-terminal arginine in SmE, a subunit that does not undergo this type of modification during the biogenesis of the spliceosomal snRNPs. An intriguing possibility is that the unique methylation pattern of Lsm11 and SmE plays a vital role in the assembly of the U7 snRNP.


  • Organizational Affiliation

    Integrative Program for Biological and Genome Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein arginine N-methyltransferase 5A,
D [auth E],
G [auth I],
J [auth M]
637Homo sapiensMutation(s): 0 
Gene Names: PRMT5HRMT1L5IBP72JBP1SKB1
EC: 2.1.1.320
UniProt & NIH Common Fund Data Resources
Find proteins for O14744 (Homo sapiens)
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PHAROS:  O14744
GTEx:  ENSG00000100462 
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UniProt GroupO14744
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Methylosome protein 50B,
E [auth F],
H [auth J],
K [auth N]
342Homo sapiensMutation(s): 0 
Gene Names: WDR77MEP50WD45HKMT1069Nbla10071
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Find proteins for Q9BQA1 (Homo sapiens)
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PHAROS:  Q9BQA1
GTEx:  ENSG00000116455 
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UniProt GroupQ9BQA1
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Methylosome subunit pIClnC,
F [auth G],
I [auth K],
L [auth O]
236Mus musculusMutation(s): 0 
Gene Names: Clns1aClciClcni
UniProt
Find proteins for Q61189 (Mus musculus)
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
U7 snRNA-associated Sm-like protein LSm11M [auth D],
N [auth H],
O [auth L],
P
360Homo sapiensMutation(s): 0 
Gene Names: LSM11
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Find proteins for P83369 (Homo sapiens)
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PHAROS:  P83369
GTEx:  ENSG00000155858 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-23
    Type: Initial release
  • Version 1.1: 2023-10-25
    Changes: Database references