8FXD

Rubrerythrin from B. pseudomallei: manganese-bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.148 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Rubrerythrin from B. pseudomallei: manganese-bound

Monteiro, D.C.F.Snell, M.E.Budziszewski, G.R.Bowman, S.E.J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Rubrerythrin169Burkholderia pseudomalleiMutation(s): 0 
Gene Names: BURPS1710b_A0924
UniProt
Find proteins for Q3JK21 (Burkholderia pseudomallei (strain 1710b))
Explore Q3JK21 
Go to UniProtKB:  Q3JK21
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3JK21
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PEG
Query on PEG

Download Ideal Coordinates CCD File 
G [auth A]
J [auth B]
K [auth B]
N [auth M]
S [auth Y]
G [auth A],
J [auth B],
K [auth B],
N [auth M],
S [auth Y],
V [auth 5],
W [auth 5]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
MN
Query on MN

Download Ideal Coordinates CCD File 
H [auth A]
I [auth A]
L [auth B]
M [auth B]
O [auth M]
H [auth A],
I [auth A],
L [auth B],
M [auth B],
O [auth M],
P [auth M],
Q [auth S],
R [auth S],
T [auth Y],
U [auth Y],
X [auth 5],
Y [auth 5]
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.148 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 201.874α = 90
b = 201.874β = 90
c = 69.025γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
STARANISOdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United StatesDBI1231306
Other privateSkarlow Foundation

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-07
    Type: Initial release