DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells
Harjes, S., Kurup, H.M., Filichev, V., Harjes, E., Jameson, G.B.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA dC->dU-editing enzyme APOBEC-3A | 199 | Homo sapiens | Mutation(s): 0  Gene Names: APOBEC3A EC: 3.5.4.38 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P31941 (Homo sapiens) Explore P31941  Go to UniProtKB:  P31941 | |||||
PHAROS:  P31941 GTEx:  ENSG00000128383  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P31941 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*CP*T)-3') | C [auth D], D [auth E] | 12 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
|
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | F [auth A] G [auth A] H [auth A] J [auth B] K [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
ZN Query on ZN | E [auth A], I [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.943 | α = 90 |
b = 56.365 | β = 104.985 |
c = 90.113 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
JBluIce-EPICS | data collection |
Aimless | data scaling |
pointless | data scaling |
MOLREP | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
---|---|---|
Health Research Council (HRC) | New Zealand | 20/1355 |