8FHJ

Crystal structure of a FAD monooxygenease from Methylocystis sp. Strain SB2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.206 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of MbnF: a NADPH-dependent flavin monooxygenase from Methylocystis strain SB2

Stewart, A.M.Dershwitz, P.Stewart, C.E.Sawaya, M.R.Yeates, T.O.Semrau, J.D.Zischka, H.DiSpirito, A.A.Bobik, T.A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
MonooxygenaseA, B, C557Methylocystis sp. SB2Mutation(s): 0 
Gene Names: CTY30_04200
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD (Subject of Investigation/LOI)
Query on FAD

Download Ideal Coordinates CCD File 
AA [auth C],
D [auth A],
L [auth B]
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
BA [auth C],
E [auth A],
F [auth A],
M [auth B],
N [auth B],
BA [auth C],
E [auth A],
F [auth A],
M [auth B],
N [auth B],
O [auth B],
P [auth B],
Q [auth B],
R [auth B],
S [auth B]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
BR
Query on BR

Download Ideal Coordinates CCD File 
CA [auth C],
DA [auth C],
G [auth A],
H [auth A],
I [auth A],
CA [auth C],
DA [auth C],
G [auth A],
H [auth A],
I [auth A],
J [auth A],
K [auth A],
U [auth B],
V [auth B],
W [auth B],
X [auth B],
Y [auth B],
Z [auth B]
BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
T [auth B]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 148.347α = 90
b = 96.765β = 116.41
c = 135.206γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
PHASERphasing
autoPROCdata processing
XDSdata reduction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy (DOE, United States)United StatesDE-SC0018059
National Science Foundation (NSF, United States)United States1912482
Iowa State University (ISU) Bailey Research and Career Development AwardUnited StatesSG0600002

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-03
    Type: Initial release