8FHB | pdb_00008fhb

Protein 32 with aldehyde deformylating oxidase activity from Synechococcus sp.

• PDB DOI: https://doi.org/10.2210/pdb8FHB/pdb

• Classification: LYASE
• Organism(s): Synechococcus sp. RCC307
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2022-12-13 Released: 2023-12-20 
• Deposition Author(s): Arenas, R., Wilson, D.K., Mak, W.S., Siegel, J.B.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free: 
  0.217 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.169 (Depositor), 0.180 (DCC) 

Starting Model: experimental

Literature

Protein 32 with aldehyde deformylating oxidase activity from Synechococcus sp.

Arenas, R., Wilson, D.K., Mak, W.S., Siegel, J.B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 25.84 kDa 
• Atom Count: 1,700 
• Modeled Residue Count: 204 
• Deposited Residue Count: 229 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
tRNA-(MS[2]IO[6]A)-hydroxylase	A	229	Synechococcus sp. RCC307	Mutation(s): 0  Gene Names: miaE

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FE (Subject of Investigation/LOI)	B [auth A]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free:  0.217 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.169 (Depositor), 0.180 (DCC) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.192	α = 90
b = 74.33	β = 90
c = 111.953	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
REFMAC	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-12-20 
Deposition Author(s): Arenas, R., Wilson, D.K., Mak, W.S., Siegel, J.B.

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Funding Organization	Location	Grant Number
Other private		--

Revision History  

• Version 1.0: 2023-12-20
  Type: Initial release