8FBD

Crystal structure of OrfX1-OrfX3 complex from Clostridium botulinum E1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.182 

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This is version 1.2 of the entry. See complete history


Literature

Crystal structures of OrfX1, OrfX2 and the OrfX1-OrfX3 complex from the orfX gene cluster of botulinum neurotoxin E1.

Gao, L.Lam, K.H.Liu, S.Przykopanski, A.Lubke, J.Qi, R.Kruger, M.Nowakowska, M.B.Selby, K.Douillard, F.P.Dorner, M.B.Perry, K.Lindstrom, M.Dorner, B.G.Rummel, A.Jin, R.

(2023) FEBS Lett 597: 524-537

  • DOI: https://doi.org/10.1002/1873-3468.14576
  • Primary Citation of Related Structures:  
    8FBD, 8FBE, 8FBF

  • PubMed Abstract: 

    Botulinum neurotoxins (BoNTs) are among the most lethal toxins known to humans, comprising seven established serotypes termed BoNT/A-G encoded in two types of gene clusters (ha and orfX) in BoNT-producing clostridia. The ha cluster encodes four non-toxic neurotoxin-associated proteins (NAPs) that assemble with BoNTs to protect and enhance their oral toxicity. However, the structure and function of the orfX-type NAPs remain largely unknown. Here, we report the crystal structures for OrfX1, OrfX2, and an OrfX1-OrfX3 complex, which are encoded in the orfX cluster of a BoNT/E1-producing Clostridium botulinum strain associated with human foodborne botulism. These structures lay the foundation for future studies on the potential roles of OrfX proteins in oral intoxication and pathogenesis of BoNTs.


  • Organizational Affiliation

    Department of Physiology and Biophysics, University of California, Irvine, CA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Neurotoxin complex component Orf-X1
A, C
144Clostridium botulinum E1 str. 'BoNT E BelugaMutation(s): 0 
UniProt
Find proteins for A0A126JJ68 (Clostridium botulinum)
Explore A0A126JJ68 
Go to UniProtKB:  A0A126JJ68
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A126JJ68
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Neurotoxin complex component Orf-X3
B, D
487Clostridium botulinum E1 str. 'BoNT E BelugaMutation(s): 2 
UniProt
Find proteins for A0A126JID3 (Clostridium botulinum)
Explore A0A126JID3 
Go to UniProtKB:  A0A126JID3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A126JID3
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.182 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.258α = 90
b = 174.033β = 90
c = 241.954γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States5R01AI091823-05

Revision History  (Full details and data files)

  • Version 1.0: 2022-12-21
    Type: Initial release
  • Version 1.1: 2023-02-08
    Changes: Database references
  • Version 1.2: 2023-03-08
    Changes: Database references