8FAA | pdb_00008faa

Crystal structure of Xanthomonas campestris GH35 beta-galactosidase

PDB DOI: https://doi.org/10.2210/pdb8FAA/pdb

Classification: HYDROLASE
Organism(s): Xanthomonas campestris pv. campestris
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-11-25 Released: 2023-11-29
Deposition Author(s): Godoy, A.S., Polikarpov, I.
Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.251 (Depositor), 0.251 (DCC)
R-Value Work:
0.211 (Depositor), 0.211 (DCC)
R-Value Observed:
0.213 (Depositor)

Starting Model: experimental
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This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Xanthomonas campestris GanA beta-galactosidase

Godoy, A.S., Polikarpov, I.

To be published.

Macromolecule Content

Total Structure Weight: 887.66 kDa
Atom Count: 65,632
Modeled Residue Count: 8,160
Deposited Residue Count: 8,176
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-galactosidase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	511	Xanthomonas campestris pv. campestris	Mutation(s): 0 Gene Names: XCC2404
UniProt
Find proteins for Q8P844 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8P844 Go to UniProtKB: Q8P844
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8P844
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.251 (Depositor), 0.251 (DCC)
R-Value Work: 0.211 (Depositor), 0.211 (DCC)
R-Value Observed: 0.213 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 128.271	α = 90
b = 162.991	β = 92.83
c = 235.478	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
XDS	data reduction
PHENIX	refinement
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-11-29

Deposition Author(s):

Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2011/05712-3

Revision History (Full details and data files)

Version 1.0: 2023-11-29
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.