8F7C | pdb_00008f7c

Cryo-EM structure of human pannexin 2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.92 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8F7C

This is version 1.1 of the entry. See complete history

Literature

Structural and functional analysis of human pannexin 2 channel.

He, Z.Zhao, Y.Rau, M.J.Fitzpatrick, J.A.J.Sah, R.Hu, H.Yuan, P.

(2023) Nat Commun 14: 1712-1712

  • DOI: https://doi.org/10.1038/s41467-023-37413-z
  • Primary Citation Related Structures: 
    8F7C

  • PubMed Abstract: 

    The pannexin 2 channel (PANX2) participates in multiple physiological processes including skin homeostasis, neuronal development, and ischemia-induced brain injury. However, the molecular basis of PANX2 channel function remains largely unknown. Here, we present a cryo-electron microscopy structure of human PANX2, which reveals pore properties contrasting with those of the intensely studied paralog PANX1. The extracellular selectivity filter, defined by a ring of basic residues, more closely resembles that of the distantly related volume-regulated anion channel (VRAC) LRRC8A, rather than PANX1. Furthermore, we show that PANX2 displays a similar anion permeability sequence as VRAC, and that PANX2 channel activity is inhibited by a commonly used VRAC inhibitor, DCPIB. Thus, the shared channel properties between PANX2 and VRAC may complicate dissection of their cellular functions through pharmacological manipulation. Collectively, our structural and functional analysis provides a framework for development of PANX2-specific reagents that are needed for better understanding of channel physiology and pathophysiology.


  • Organizational Affiliation
    • Department of Cell Biology and Physiology, Washington University School of Medicine, Saint Louis, MO, USA.

Macromolecule Content 

  • Total Structure Weight: 385.23 kDa 
  • Atom Count: 15,925 
  • Modeled Residue Count: 2,009 
  • Deposited Residue Count: 3,409 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Pannexin-2, Soluble cytochrome b562 fusion
A, B, C, D, E
A, B, C, D, E, F, G
487Homo sapiensEscherichia coli
This entity is chimeric
Mutation(s): 0 
Gene Names: PANX2cybC
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P0ABE7 (Escherichia coli)
Explore P0ABE7 
Go to UniProtKB:  P0ABE7
Find proteins for Q96RD6 (Homo sapiens)
Explore Q96RD6 
Go to UniProtKB:  Q96RD6
PHAROS:  Q96RD6
GTEx:  ENSG00000073150 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP0ABE7Q96RD6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.92 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesR01NS109307

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-05
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Data collection, Structure summary