8EXZ | pdb_00008exz

Structure of GDAP1 containing CMT mutant T157P

• PDB DOI: https://doi.org/10.2210/pdb8EXZ/pdb

• Classification: TRANSFERASE
• Organism(s): Mus musculus
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2022-10-26 Released: 2023-11-08 
• Deposition Author(s): Googins, M.R., VanDemark, A.P.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.82 Å
• R-Value Free: 
  0.279 (Depositor), 0.261 (DCC) 
• R-Value Work: 
  0.255 (Depositor) 
• R-Value Observed: 
  0.257 (Depositor) 

Starting Model: experimental

Literature

Structure of GDAP1 containing CMT mutant T157P

Googins, M.R., VanDemark, A.P.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 82.74 kDa 
• Atom Count: 3,698 
• Modeled Residue Count: 448 
• Deposited Residue Count: 716 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ganglioside-induced differentiation-associated protein 1	A, B	358	Mus musculus	Mutation(s): 1  Gene Names: Gdap1
UniProt & NIH Common Fund Data Resources
Find proteins for O88741 (Mus musculus) Explore O88741  Go to UniProtKB:  O88741
IMPC:  MGI:1338002

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.82 Å
• R-Value Free:  0.279 (Depositor), 0.261 (DCC) 
• R-Value Work:  0.255 (Depositor) 
• R-Value Observed: 0.257 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.586	α = 90
b = 80.064	β = 90
c = 85.81	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-11-08 
Deposition Author(s): Googins, M.R., VanDemark, A.P.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2023-11-08
  Type: Initial release
  
• Version 1.1: 2024-11-13
  Changes: Structure summary
• Version 1.2: 2026-03-04
  Changes: Refinement description