8ETF

Bile Salt Hydrolase B from Lactobacillus gasseri with covalent inhibitor bound

PDB DOI: https://doi.org/10.2210/pdb8ETF/pdb

Classification: HYDROLASE/HYDROLASE INHIBITOR
Organism(s): Lactobacillus gasseri
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-10-17 Released: 2023-11-01
Deposition Author(s): Walker, M.E., Redinbo, M.R.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free: 0.222
R-Value Work: 0.186
R-Value Observed: 0.187

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Structural diversity of bile salt hydrolases reveals rationale for substrate selectivity

Walker, M.E., Redinbo, M.R.

To be published.

Macromolecule Content

Total Structure Weight: 300.32 kDa
Atom Count: 21,685
Modelled Residue Count: 2,610
Deposited Residue Count: 2,648
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Choloylglycine hydrolase	A [auth H] B [auth A] C [auth B] D [auth C] E [auth D] A [auth H], B [auth A], C [auth B], D [auth C], E [auth D], F [auth E], G [auth F], H [auth G]	331	Lactobacillus gasseri	Mutation(s): 0 Gene Names: F8244_03005
UniProt
Find proteins for A0A833FHE1 (Lactobacillus gasseri) Explore A0A833FHE1 Go to UniProtKB: A0A833FHE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A833FHE1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
WU5 (Subject of Investigation/LOI) Query on WU5 Download Ideal Coordinates CCD File SDF format, chain I [auth H] SDF format, chain J [auth A] SDF format, chain K [auth B] SDF format, chain M [auth C] SDF format, chain N [auth D] SDF format, chain O [auth E] SDF format, chain P [auth F] SDF format, chain R [auth G] MOL2 format, chain I [auth H] MOL2 format, chain J [auth A] MOL2 format, chain K [auth B] MOL2 format, chain M [auth C] MOL2 format, chain N [auth D] MOL2 format, chain O [auth E] MOL2 format, chain P [auth F] MOL2 format, chain R [auth G]	I [auth H] J [auth A] K [auth B] M [auth C] N [auth D] I [auth H], J [auth A], K [auth B], M [auth C], N [auth D], O [auth E], P [auth F], R [auth G]	(5R)-1-fluoro-5-[(1R,3aS,3bR,5aR,7R,9aS,9bS,11aR)-7-hydroxy-9a,11a-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-1-yl]hexan-2-one (non-preferred name) C₂₅ H₄₁ F O₂ YECICDGDDQGLJC-QIAJLKNUSA-N		Interactions Focus chain I [auth H] Focus chain J [auth A] Focus chain K [auth B] Focus chain M [auth C] Focus chain N [auth D] Focus chain O [auth E] Focus chain P [auth F] Focus chain R [auth G] Interactions & Density Focus chain I [auth H] Focus chain J [auth A] Focus chain K [auth B] Focus chain M [auth C] Focus chain N [auth D] Focus chain O [auth E] Focus chain P [auth F] Focus chain R [auth G]
NI Query on NI Download Ideal Coordinates CCD File SDF format, chain L [auth B] SDF format, chain Q [auth F] MOL2 format, chain L [auth B] MOL2 format, chain Q [auth F]	L [auth B], Q [auth F]	NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N		Interactions Focus chain L [auth B] Focus chain Q [auth F] Interactions & Density Focus chain L [auth B] Focus chain Q [auth F]