8ESF | pdb_00008esf

Crystal structure of human Nischarin PX and LRR domains with engineered mutations

• PDB DOI: https://doi.org/10.2210/pdb8ESF/pdb

• Classification: ENDOCYTOSIS
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2022-10-13 Released: 2023-10-25 
• Deposition Author(s): Eldershaw, D.E., Collins, B.M.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free: 
  0.243 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.215 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.217 (Depositor) 

Literature

Crystal structure of human Nischarin PX and LRR domains with engineered mutations

Eldershaw, D.E., Collins, B.M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 112.86 kDa 
• Atom Count: 6,808 
• Modeled Residue Count: 847 
• Deposited Residue Count: 1,004 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nischarin	A, B	502	Homo sapiens	Mutation(s): 1  Gene Names: NISCH, IRAS, KIAA0975
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y2I1 (Homo sapiens) Explore Q9Y2I1  Go to UniProtKB:  Q9Y2I1
PHAROS:  Q9Y2I1 GTEx:  ENSG00000010322

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
IMD (Subject of Investigation/LOI)	C [auth A]	IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free:  0.243 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.215 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.217 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.173	α = 90
b = 83.307	β = 94.36
c = 90.83	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-10-25 
Deposition Author(s): Eldershaw, D.E., Collins, B.M.

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Funding Organization	Location	Grant Number
Not funded	Australia	--

Revision History  

• Version 1.0: 2023-10-25
  Type: Initial release