8ES9

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

(2023) Nat Commun 14: 2401

Macromolecule Content

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PN45428 TCR alpha chain	A	274	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
PN45428 TCR beta chain	B	320	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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Reference Sequence

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
T-cell surface glycoprotein CD3 zeta chain	C [auth Z], D [auth Y]	173	Homo sapiens	Mutation(s): 0 Gene Names: CD247, CD3Z, T3Z, TCRZ Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P20963 (Homo sapiens) Explore P20963 Go to UniProtKB: P20963
PHAROS: P20963 GTEx: ENSG00000198821
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P20963
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Reference Sequence

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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
T-cell surface glycoprotein CD3 delta chain	E [auth D]	174	Homo sapiens	Mutation(s): 0 Gene Names: CD3D, T3D Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P04234 (Homo sapiens) Explore P04234 Go to UniProtKB: P04234
PHAROS: P04234 GTEx: ENSG00000167286
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P04234
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Reference Sequence

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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
T-cell surface glycoprotein CD3 epsilon chain	F, H [auth E]	211	Homo sapiens	Mutation(s): 0 Gene Names: CD3E, T3E Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P07766 (Homo sapiens) Explore P07766 Go to UniProtKB: P07766
PHAROS: P07766 GTEx: ENSG00000198851
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P07766
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Reference Sequence

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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
T-cell surface glycoprotein CD3 gamma chain	G	185	Homo sapiens	Mutation(s): 0 Gene Names: CD3G, T3G Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P09693 (Homo sapiens) Explore P09693 Go to UniProtKB: P09693
PHAROS: P09693 GTEx: ENSG00000160654
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P09693
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Reference Sequence

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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
MHC class I antigen	I [auth N]	277	Homo sapiens	Mutation(s): 0 Gene Names: HLA-A02:01 Membrane Entity:* Yes
UniProt
Find proteins for Q861F7 (Homo sapiens) Explore Q861F7 Go to UniProtKB: Q861F7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q861F7
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Reference Sequence

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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-2-microglobulin	J [auth M]	100	Homo sapiens	Mutation(s): 0 Gene Names: B2M, CDABP0092, HDCMA22P Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P61769 (Homo sapiens) Explore P61769 Go to UniProtKB: P61769
PHAROS: P61769 GTEx: ENSG00000166710
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P61769
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Reference Sequence

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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Melanoma-associated antigen 4	K [auth P]	10	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P43358 (Homo sapiens) Explore P43358 Go to UniProtKB: P43358
PHAROS: P43358 GTEx: ENSG00000147381
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P43358
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 10
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	L [auth H]	3	N/A	N-Glycosylation	Interactions Focus chain L [auth H] Interactions & Density Focus chain L [auth H]
Glycosylation Resources
GlyTouCan: G15407YE GlyCosmos: G15407YE GlyGen: G15407YE

Entity ID: 11
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	M [auth L], N [auth T]	2	N/A	N-Glycosylation	Interactions Focus chain M [auth L] Focus chain N [auth T] Interactions & Density Focus chain M [auth L] Focus chain N [auth T]
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
Y01 Query on Y01 Download Ideal Coordinates CCD File SDF format, chain S [auth B] MOL2 format, chain S [auth B]	S [auth B]	CHOLESTEROL HEMISUCCINATE C₃₁ H₅₀ O₄ WLNARFZDISHUGS-MIXBDBMTSA-N		Interactions Focus chain S [auth B] Interactions & Density Focus chain S [auth B]
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain R [auth B] SDF format, chain O [auth A] SDF format, chain P [auth A] SDF format, chain Q [auth A] SDF format, chain T [auth G] SDF format, chain U [auth G] MOL2 format, chain R [auth B] MOL2 format, chain O [auth A] MOL2 format, chain P [auth A] MOL2 format, chain Q [auth A] MOL2 format, chain T [auth G] MOL2 format, chain U [auth G]	O [auth A] P [auth A] Q [auth A] R [auth B] T [auth G] O [auth A], P [auth A], Q [auth A], R [auth B], T [auth G], U [auth G]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain R [auth B] Focus chain T [auth G] Focus chain U [auth G] Interactions & Density Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth A] Focus chain R [auth B] Focus chain T [auth G] Focus chain U [auth G]