8EOK

Structure of the C3bB proconvertase in complex with lufaxin and factor Xa


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.53 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

A bispecific inhibitor of complement and coagulation blocks activation in complementopathy models via a novel mechanism.

Andersen, J.F.Lei, H.Strayer, E.C.Kanai, T.Pham, V.Pan, X.Z.Alvarenga, P.H.Gerber, G.F.Asojo, O.A.Francischetti, I.M.B.Brodsky, R.A.Valenzuela, J.G.Ribeiro, J.M.C.

(2023) Blood 141: 3109-3121

  • DOI: https://doi.org/10.1182/blood.2022019359
  • Primary Citation of Related Structures:  
    8ENU, 8EO2, 8EOK

  • PubMed Abstract: 

    Inhibitors of complement and coagulation are present in the saliva of a variety of blood-feeding arthropods that transmit parasitic and viral pathogens. Here, we describe the structure and mechanism of action of the sand fly salivary protein lufaxin, which inhibits the formation of the central alternative C3 convertase (C3bBb) and inhibits coagulation factor Xa (fXa). Surface plasmon resonance experiments show that lufaxin stabilizes the binding of serine protease factor B (FB) to C3b but does not detectably bind either C3b or FB alone. The crystal structure of the inhibitor reveals a novel all β-sheet fold containing 2 domains. A structure of the lufaxin-C3bB complex obtained via cryo-electron microscopy (EM) shows that lufaxin binds via its N-terminal domain at an interface containing elements of both C3b and FB. By occupying this spot, the inhibitor locks FB into a closed conformation in which proteolytic activation of FB by FD cannot occur. C3bB-bound lufaxin binds fXa at a separate site in its C-terminal domain. In the cryo-EM structure of a C3bB-lufaxin-fXa complex, the inhibitor binds to both targets simultaneously, and lufaxin inhibits fXa through substrate-like binding of a C-terminal peptide at the active site as well as other interactions in this region. Lufaxin inhibits complement activation in ex vivo models of atypical hemolytic uremic syndrome (aHUS) and paroxysmal nocturnal hemoglobinuria (PNH) as well as thrombin generation in plasma, providing a rationale for the development of a bispecific inhibitor to treat complement-related diseases in which thrombosis is a prominent manifestation.


  • Organizational Affiliation

    Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Complement C3 beta chainA [auth G]645Homo sapiensMutation(s): 0 
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Find proteins for P01024 (Homo sapiens)
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PHAROS:  P01024
GTEx:  ENSG00000125730 
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UniProt GroupP01024
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Complement C3b alpha' chainB [auth H]915Homo sapiensMutation(s): 0 
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Find proteins for P01024 (Homo sapiens)
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PHAROS:  P01024
GTEx:  ENSG00000125730 
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UniProt GroupP01024
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Complement factor BC [auth D]763Homo sapiensMutation(s): 0 
EC: 3.4.21.47
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Find proteins for P00751 (Homo sapiens)
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PHAROS:  P00751
GTEx:  ENSG00000243649 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
LufaxinD [auth A]284Lutzomyia longipalpisMutation(s): 0 
UniProt
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UniProt GroupQ5WPU8
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Factor X light chainE [auth L]134Homo sapiensMutation(s): 0 
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PHAROS:  P00742
GTEx:  ENSG00000126218 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Activated factor Xa heavy chainF [auth C]254Homo sapiensMutation(s): 0 
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GTEx:  ENSG00000126218 
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Oligosaccharides

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Entity ID: 7
MoleculeChains Length2D Diagram Glycosylation3D Interactions
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseG [auth B]3N-Glycosylation
Glycosylation Resources
GlyTouCan:  G15407YE
GlyCosmos:  G15407YE
GlyGen:  G15407YE
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.53 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0.0

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-30
    Type: Initial release