8EO9 | pdb_00008eo9

The solution structure of abxF, an enzyme catalyzing the formation of chiral spiroketal of an antibiotics, (-)-ABX

PDB DOI: https://doi.org/10.2210/pdb8EO9/pdb
BMRB: 31044

Classification: BIOSYNTHETIC PROTEIN
Organism(s): Streptomyces sp.
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-10-02 Released: 2024-04-03
Deposition Author(s): Jia, X., Yan, X., Mobli, M., Qu, X.
Funding Organization(s): Australian Research Council (ARC), National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

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This is version 2.1 of the entry. See complete history.

Literature

The solution structure of abxF, an enzyme catalyzing the formation of chiral spiroketal of an antibiotics, (-)-ABX.

Jia, X., Yan, X., Mobli, M., Qu, X.

(2025) Nat Chem

Macromolecule Content

Total Structure Weight: 25.19 kDa
Atom Count: 1,773
Modeled Residue Count: 245
Deposited Residue Count: 245
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glyoxalase	A	245	Streptomyces sp.	Mutation(s): 0 Gene Names: abxF
UniProt
Find proteins for A0ACD6B913 (Streptomyces sp) Explore A0ACD6B913 Go to UniProtKB: A0ACD6B913
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6B913
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2024-04-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Australian Research Council (ARC)	Australia	DP220103028
National Science Foundation (NSF, China)	China	1800048

Revision History (Full details and data files)

Version 1.0: 2024-04-03
Type: Initial release
Version 1.1: 2024-05-15
Changes: Database references
Version 2.0: 2025-02-12
Type: Coordinate replacement
Reason: Atomic clashes
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Refinement description, Structure summary
Version 2.1: 2025-04-16
Changes: Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.