8EM6

Bacteriophage HRP29 Procapsid Icosohedral Reconstruction

• PDB DOI: https://doi.org/10.2210/pdb8EM6/pdb
• EM Map EMD-28238: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Shigella phage Buco
• Mutation(s): No 


• Deposited: 2022-09-26 Released: 2023-09-27 
• Deposition Author(s): Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Science Foundation (NSF, United States)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of Shigella bacteriophage HRP29

Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 420-mer - A420 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 258.38 kDa 
• Atom Count: 15,593 
• Modelled Residue Count: 2,128 
• Deposited Residue Count: 2,317 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gp37	A, B, C, D, E, F, G	331	Shigella phage Buco	Mutation(s): 0
UniProt
Find proteins for A0A482JKU4 (Shigella phage Buco) Explore A0A482JKU4  Go to UniProtKB:  A0A482JKU4

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.50 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-09-27 
Deposition Author(s): Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM110185
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM116789
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM140803
National Science Foundation (NSF, United States)	United States	1750125

Revision History  

• Version 1.0: 2023-09-27
  Type: Initial release