8EJA

Computational design of potent and selective inhibitors of Bak and Bax

• PDB DOI: https://doi.org/10.2210/pdb8EJA/pdb

• Classification: DE NOVO PROTEIN
• Organism(s): synthetic construct
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-09-16 Released: 2024-03-20 
• Deposition Author(s): Bera, A.K., Berger, S.A., Baker, D.
• Funding Organization(s): Howard Hughes Medical Institute (HHMI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.81 Å
• R-Value Free: 0.308 
• R-Value Work: 0.259 
• R-Value Observed: 0.264 

Literature

Computational design of potent and selective inhibitors of Bak and Bax

Berger, S., Baker, D.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 27.62 kDa 
• Atom Count: 1,881 
• Modelled Residue Count: 225 
• Deposited Residue Count: 236 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
aBAK	A [auth B], B [auth A]	118	synthetic construct	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.81 Å
• R-Value Free: 0.308 
• R-Value Work: 0.259 
• R-Value Observed: 0.264 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.829	α = 90
b = 53.829	β = 90
c = 206.038	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-20 
Deposition Author(s): Bera, A.K., Berger, S.A., Baker, D.

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Funding Organization	Location	Grant Number
Howard Hughes Medical Institute (HHMI)	United States	--

Revision History  

• Version 1.0: 2024-03-20
  Type: Initial release