8EIF | pdb_00008eif

Crystal structure of unmodified Pseudomonas aeruginosa protein PA0709

PDB DOI: https://doi.org/10.2210/pdb8EIF/pdb

Classification: CYTOSOLIC PROTEIN
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-09-14 Released: 2023-09-27
Deposition Author(s): Cuthbert, B.J., Goulding, C.W.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.208 (Depositor), 0.207 (DCC)
R-Value Work:
0.171 (Depositor), 0.172 (DCC)
R-Value Observed:
0.175 (Depositor)

Starting Model: other
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wwPDB Validation 3D Report Full Report

Validation slider image for 8EIF

This is version 1.1 of the entry. See complete history.

Literature

Structural characterization of PA0709

Cuthbert, B.J., Goulding, C.W., Ulijasz, A.T.

To be published.

Macromolecule Content

Total Structure Weight: 149.82 kDa
Atom Count: 10,805
Modeled Residue Count: 1,175
Deposited Residue Count: 1,224
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Antibiotic biosynthesis monooxygenase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	102	Pseudomonas aeruginosa	Mutation(s): 0 EC: 1
UniProt
Find proteins for A0A072ZNL3 (Pseudomonas aeruginosa) Explore A0A072ZNL3 Go to UniProtKB: A0A072ZNL3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A072ZNL3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 6 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
1PE Query on 1PE Download:Ideal Coordinates CCD File SDF format, chain Z [auth B] SDF format, chain YC [auth L] SDF format, chain YB [auth H] SDF format, chain YA [auth E] SDF format, chain XA [auth D] SDF format, chain QA [auth C] SDF format, chain MC [auth K] SDF format, chain LB [auth F] SDF format, chain FC [auth I] MOL2 format, chain Z [auth B] MOL2 format, chain YC [auth L] MOL2 format, chain YB [auth H] MOL2 format, chain YA [auth E] MOL2 format, chain XA [auth D] MOL2 format, chain QA [auth C] MOL2 format, chain MC [auth K] MOL2 format, chain LB [auth F] MOL2 format, chain FC [auth I] mmCIF format, chain Z [auth B] mmCIF format, chain YC [auth L] mmCIF format, chain YB [auth H] mmCIF format, chain YA [auth E] mmCIF format, chain XA [auth D] mmCIF format, chain QA [auth C] mmCIF format, chain MC [auth K] mmCIF format, chain LB [auth F] mmCIF format, chain FC [auth I]	FC [auth I] LB [auth F] MC [auth K] QA [auth C] XA [auth D] FC [auth I], LB [auth F], MC [auth K], QA [auth C], XA [auth D], YA [auth E], YB [auth H], YC [auth L], Z [auth B]	PENTAETHYLENE GLYCOL C₁₀ H₂₂ O₆ JLFNLZLINWHATN-UHFFFAOYSA-N		Interactions Focus chain FC [auth I] Focus chain LB [auth F] Focus chain MC [auth K] Focus chain QA [auth C] Focus chain XA [auth D] Focus chain YA [auth E] Focus chain YB [auth H] Focus chain YC [auth L] Focus chain Z [auth B] Interactions & Density Focus chain FC [auth I] Focus chain LB [auth F] Focus chain MC [auth K] Focus chain QA [auth C] Focus chain XA [auth D] Focus chain YA [auth E] Focus chain YB [auth H] Focus chain YC [auth L] Focus chain Z [auth B]
PG4 Query on PG4 Download:Ideal Coordinates CCD File SDF format, chain SA [auth D] MOL2 format, chain SA [auth D] mmCIF format, chain SA [auth D]	SA [auth D]	TETRAETHYLENE GLYCOL C₈ H₁₈ O₅ UWHCKJMYHZGTIT-UHFFFAOYSA-N		Interactions Focus chain SA [auth D] Interactions & Density Focus chain SA [auth D]
CAD Query on CAD Download:Ideal Coordinates CCD File SDF format, chain ZA [auth E] SDF format, chain W [auth A] SDF format, chain UB [auth G] SDF format, chain SC [auth L] SDF format, chain MB [auth F] SDF format, chain HC [auth I] SDF format, chain FA [auth B] SDF format, chain BC [auth H] MOL2 format, chain ZA [auth E] MOL2 format, chain W [auth A] MOL2 format, chain UB [auth G] MOL2 format, chain SC [auth L] MOL2 format, chain MB [auth F] MOL2 format, chain HC [auth I] MOL2 format, chain FA [auth B] MOL2 format, chain BC [auth H] mmCIF format, chain ZA [auth E] mmCIF format, chain W [auth A] mmCIF format, chain UB [auth G] mmCIF format, chain SC [auth L] mmCIF format, chain MB [auth F] mmCIF format, chain HC [auth I] mmCIF format, chain FA [auth B] mmCIF format, chain BC [auth H]	BC [auth H] FA [auth B] HC [auth I] MB [auth F] SC [auth L] BC [auth H], FA [auth B], HC [auth I], MB [auth F], SC [auth L], UB [auth G], W [auth A], ZA [auth E]	CACODYLIC ACID C₂ H₇ As O₂ OGGXGZAMXPVRFZ-UHFFFAOYSA-N		Interactions Focus chain BC [auth H] Focus chain FA [auth B] Focus chain HC [auth I] Focus chain MB [auth F] Focus chain SC [auth L] Focus chain UB [auth G] Focus chain W [auth A] Focus chain ZA [auth E] Interactions & Density Focus chain BC [auth H] Focus chain FA [auth B] Focus chain HC [auth I] Focus chain MB [auth F] Focus chain SC [auth L] Focus chain UB [auth G] Focus chain W [auth A] Focus chain ZA [auth E]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain UC [auth L] SDF format, chain U [auth A] SDF format, chain R [auth A] SDF format, chain PB [auth G] SDF format, chain MA [auth C] SDF format, chain LA [auth C] SDF format, chain JA [auth B] SDF format, chain IA [auth B] SDF format, chain HB [auth F] SDF format, chain GB [auth F] SDF format, chain FB [auth E] SDF format, chain EA [auth B] SDF format, chain DB [auth E] SDF format, chain DA [auth B] SDF format, chain CC [auth H] SDF format, chain AC [auth H] SDF format, chain AA [auth B] MOL2 format, chain UC [auth L] MOL2 format, chain U [auth A] MOL2 format, chain R [auth A] MOL2 format, chain PB [auth G] MOL2 format, chain MA [auth C] MOL2 format, chain LA [auth C] MOL2 format, chain JA [auth B] MOL2 format, chain IA [auth B] MOL2 format, chain HB [auth F] MOL2 format, chain GB [auth F] MOL2 format, chain FB [auth E] MOL2 format, chain EA [auth B] MOL2 format, chain DB [auth E] MOL2 format, chain DA [auth B] MOL2 format, chain CC [auth H] MOL2 format, chain AC [auth H] MOL2 format, chain AA [auth B] mmCIF format, chain UC [auth L] mmCIF format, chain U [auth A] mmCIF format, chain R [auth A] mmCIF format, chain PB [auth G] mmCIF format, chain MA [auth C] mmCIF format, chain LA [auth C] mmCIF format, chain JA [auth B] mmCIF format, chain IA [auth B] mmCIF format, chain HB [auth F] mmCIF format, chain GB [auth F] mmCIF format, chain FB [auth E] mmCIF format, chain EA [auth B] mmCIF format, chain DB [auth E] mmCIF format, chain DA [auth B] mmCIF format, chain CC [auth H] mmCIF format, chain AC [auth H] mmCIF format, chain AA [auth B]	AA [auth B] AC [auth H] CC [auth H] DA [auth B] DB [auth E] AA [auth B], AC [auth H], CC [auth H], DA [auth B], DB [auth E], EA [auth B], FB [auth E], GB [auth F], HB [auth F], IA [auth B], JA [auth B], LA [auth C], MA [auth C], PB [auth G], R [auth A], U [auth A], UC [auth L]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain AA [auth B] Focus chain AC [auth H] Focus chain CC [auth H] Focus chain DA [auth B] Focus chain DB [auth E] Focus chain EA [auth B] Focus chain FB [auth E] Focus chain GB [auth F] Focus chain HB [auth F] Focus chain IA [auth B] Focus chain JA [auth B] Focus chain LA [auth C] Focus chain MA [auth C] Focus chain PB [auth G] Focus chain R [auth A] Focus chain U [auth A] Focus chain UC [auth L] Interactions & Density Focus chain AA [auth B] Focus chain AC [auth H] Focus chain CC [auth H] Focus chain DA [auth B] Focus chain DB [auth E] Focus chain EA [auth B] Focus chain FB [auth E] Focus chain GB [auth F] Focus chain HB [auth F] Focus chain IA [auth B] Focus chain JA [auth B] Focus chain LA [auth C] Focus chain MA [auth C] Focus chain PB [auth G] Focus chain R [auth A] Focus chain U [auth A] Focus chain UC [auth L]
GLY Query on GLY Download:Ideal Coordinates CCD File SDF format, chain Y [auth B] MOL2 format, chain Y [auth B] mmCIF format, chain Y [auth B]	Y [auth B]	GLYCINE C₂ H₅ N O₂ DHMQDGOQFOQNFH-UHFFFAOYSA-N		Interactions Focus chain Y [auth B] Interactions & Density Focus chain Y [auth B]
PPI Query on PPI Download:Ideal Coordinates CCD File SDF format, chain BA [auth B] SDF format, chain NB [auth F] SDF format, chain P [auth A] SDF format, chain SB [auth G] SDF format, chain VB [auth H] SDF format, chain VC [auth L] SDF format, chain WA [auth D] SDF format, chain XC [auth L] SDF format, chain ZC [auth L] SDF format, chain ZB [auth H] SDF format, chain XB [auth H] SDF format, chain X [auth B] SDF format, chain WC [auth L] SDF format, chain WB [auth H] SDF format, chain VA [auth D] SDF format, chain V [auth A] SDF format, chain UA [auth D] SDF format, chain TC [auth L] SDF format, chain TB [auth G] SDF format, chain TA [auth D] SDF format, chain T [auth A] SDF format, chain S [auth A] SDF format, chain RC [auth K] SDF format, chain RB [auth G] SDF format, chain RA [auth C] SDF format, chain QC [auth K] SDF format, chain QB [auth G] SDF format, chain Q [auth A] SDF format, chain PC [auth K] SDF format, chain PA [auth C] SDF format, chain OC [auth K] SDF format, chain OB [auth G] SDF format, chain OA [auth C] SDF format, chain O [auth A] SDF format, chain NC [auth K] SDF format, chain NA [auth C] SDF format, chain N [auth A] SDF format, chain M [auth A] SDF format, chain LC [auth J] SDF format, chain KC [auth J] SDF format, chain KB [auth F] SDF format, chain KA [auth C] SDF format, chain JC [auth J] SDF format, chain JB [auth F] SDF format, chain IC [auth I] SDF format, chain IB [auth F] SDF format, chain HA [auth B] SDF format, chain GC [auth I] SDF format, chain GA [auth B] SDF format, chain EC [auth I] SDF format, chain EB [auth E] SDF format, chain DC [auth I] SDF format, chain CB [auth E] SDF format, chain CA [auth B] SDF format, chain BB [auth E] SDF format, chain AD [auth L] SDF format, chain AB [auth E] MOL2 format, chain BA [auth B] MOL2 format, chain NB [auth F] MOL2 format, chain P [auth A] MOL2 format, chain SB [auth G] MOL2 format, chain VB [auth H] MOL2 format, chain VC [auth L] MOL2 format, chain WA [auth D] MOL2 format, chain XC [auth L] MOL2 format, chain ZC [auth L] MOL2 format, chain ZB [auth H] MOL2 format, chain XB [auth H] MOL2 format, chain X [auth B] MOL2 format, chain WC [auth L] MOL2 format, chain WB [auth H] MOL2 format, chain VA [auth D] MOL2 format, chain V [auth A] MOL2 format, chain UA [auth D] MOL2 format, chain TC [auth L] MOL2 format, chain TB [auth G] MOL2 format, chain TA [auth D] MOL2 format, chain T [auth A] MOL2 format, chain S [auth A] MOL2 format, chain RC [auth K] MOL2 format, chain RB [auth G] MOL2 format, chain RA [auth C] MOL2 format, chain QC [auth K] MOL2 format, chain QB [auth G] MOL2 format, chain Q [auth A] MOL2 format, chain PC [auth K] MOL2 format, chain PA [auth C] MOL2 format, chain OC [auth K] MOL2 format, chain OB [auth G] MOL2 format, chain OA [auth C] MOL2 format, chain O [auth A] MOL2 format, chain NC [auth K] MOL2 format, chain NA [auth C] MOL2 format, chain N [auth A] MOL2 format, chain M [auth A] MOL2 format, chain LC [auth J] MOL2 format, chain KC [auth J] MOL2 format, chain KB [auth F] MOL2 format, chain KA [auth C] MOL2 format, chain JC [auth J] MOL2 format, chain JB [auth F] MOL2 format, chain IC [auth I] MOL2 format, chain IB [auth F] MOL2 format, chain HA [auth B] MOL2 format, chain GC [auth I] MOL2 format, chain GA [auth B] MOL2 format, chain EC [auth I] MOL2 format, chain EB [auth E] MOL2 format, chain DC [auth I] MOL2 format, chain CB [auth E] MOL2 format, chain CA [auth B] MOL2 format, chain BB [auth E] MOL2 format, chain AD [auth L] MOL2 format, chain AB [auth E] mmCIF format, chain BA [auth B] mmCIF format, chain NB [auth F] mmCIF format, chain P [auth A] mmCIF format, chain SB [auth G] mmCIF format, chain VB [auth H] mmCIF format, chain VC [auth L] mmCIF format, chain WA [auth D] mmCIF format, chain XC [auth L] mmCIF format, chain ZC [auth L] mmCIF format, chain ZB [auth H] mmCIF format, chain XB [auth H] mmCIF format, chain X [auth B] mmCIF format, chain WC [auth L] mmCIF format, chain WB [auth H] mmCIF format, chain VA [auth D] mmCIF format, chain V [auth A] mmCIF format, chain UA [auth D] mmCIF format, chain TC [auth L] mmCIF format, chain TB [auth G] mmCIF format, chain TA [auth D] mmCIF format, chain T [auth A] mmCIF format, chain S [auth A] mmCIF format, chain RC [auth K] mmCIF format, chain RB [auth G] mmCIF format, chain RA [auth C] mmCIF format, chain QC [auth K] mmCIF format, chain QB [auth G] mmCIF format, chain Q [auth A] mmCIF format, chain PC [auth K] mmCIF format, chain PA [auth C] mmCIF format, chain OC [auth K] mmCIF format, chain OB [auth G] mmCIF format, chain OA [auth C] mmCIF format, chain O [auth A] mmCIF format, chain NC [auth K] mmCIF format, chain NA [auth C] mmCIF format, chain N [auth A] mmCIF format, chain M [auth A] mmCIF format, chain LC [auth J] mmCIF format, chain KC [auth J] mmCIF format, chain KB [auth F] mmCIF format, chain KA [auth C] mmCIF format, chain JC [auth J] mmCIF format, chain JB [auth F] mmCIF format, chain IC [auth I] mmCIF format, chain IB [auth F] mmCIF format, chain HA [auth B] mmCIF format, chain GC [auth I] mmCIF format, chain GA [auth B] mmCIF format, chain EC [auth I] mmCIF format, chain EB [auth E] mmCIF format, chain DC [auth I] mmCIF format, chain CB [auth E] mmCIF format, chain CA [auth B] mmCIF format, chain BB [auth E] mmCIF format, chain AD [auth L] mmCIF format, chain AB [auth E]	AB [auth E] AD [auth L] BA [auth B] BB [auth E] CA [auth B] AB [auth E], AD [auth L], BA [auth B], BB [auth E], CA [auth B], CB [auth E], DC [auth I], EB [auth E], EC [auth I], GA [auth B], GC [auth I], HA [auth B], IB [auth F], IC [auth I], JB [auth F], JC [auth J], KA [auth C], KB [auth F], KC [auth J], LC [auth J], M [auth A], N [auth A], NA [auth C], NB [auth F], NC [auth K], O [auth A], OA [auth C], OB [auth G], OC [auth K], P [auth A], PA [auth C], PC [auth K], Q [auth A], QB [auth G], QC [auth K], RA [auth C], RB [auth G], RC [auth K], S [auth A], SB [auth G], T [auth A], TA [auth D], TB [auth G], TC [auth L], UA [auth D], V [auth A], VA [auth D], VB [auth H], VC [auth L], WA [auth D], WB [auth H], WC [auth L], X [auth B], XB [auth H], XC [auth L], ZB [auth H], ZC [auth L]	PROPANOIC ACID C₃ H₆ O₂ XBDQKXXYIPTUBI-UHFFFAOYSA-N		Interactions Focus chain AB [auth E] Focus chain AD [auth L] Focus chain BA [auth B] Focus chain BB [auth E] Focus chain CA [auth B] Focus chain CB [auth E] Focus chain DC [auth I] Focus chain EB [auth E] Focus chain EC [auth I] Focus chain GA [auth B] Focus chain GC [auth I] Focus chain HA [auth B] Focus chain IB [auth F] Focus chain IC [auth I] Focus chain JB [auth F] Focus chain JC [auth J] Focus chain KA [auth C] Focus chain KB [auth F] Focus chain KC [auth J] Focus chain LC [auth J] Focus chain M [auth A] Focus chain N [auth A] Focus chain NA [auth C] Focus chain NB [auth F] Focus chain NC [auth K] Focus chain O [auth A] Focus chain OA [auth C] Focus chain OB [auth G] Focus chain OC [auth K] Focus chain P [auth A] Focus chain PA [auth C] Focus chain PC [auth K] Focus chain Q [auth A] Focus chain QB [auth G] Focus chain QC [auth K] Focus chain RA [auth C] Focus chain RB [auth G] Focus chain RC [auth K] Focus chain S [auth A] Focus chain SB [auth G] Focus chain T [auth A] Focus chain TA [auth D] Focus chain TB [auth G] Focus chain TC [auth L] Focus chain UA [auth D] Focus chain V [auth A] Focus chain VA [auth D] Focus chain VB [auth H] Focus chain VC [auth L] Focus chain WA [auth D] Focus chain WB [auth H] Focus chain WC [auth L] Focus chain X [auth B] Focus chain XB [auth H] Focus chain XC [auth L] Focus chain ZB [auth H] Focus chain ZC [auth L] Interactions & Density Focus chain AB [auth E] Focus chain AD [auth L] Focus chain BA [auth B] Focus chain BB [auth E] Focus chain CA [auth B] Focus chain CB [auth E] Focus chain DC [auth I] Focus chain EB [auth E] Focus chain EC [auth I] Focus chain GA [auth B] Focus chain GC [auth I] Focus chain HA [auth B] Focus chain IB [auth F] Focus chain IC [auth I] Focus chain JB [auth F] Focus chain JC [auth J] Focus chain KA [auth C] Focus chain KB [auth F] Focus chain KC [auth J] Focus chain LC [auth J] Focus chain M [auth A] Focus chain N [auth A] Focus chain NA [auth C] Focus chain NB [auth F] Focus chain NC [auth K] Focus chain O [auth A] Focus chain OA [auth C] Focus chain OB [auth G] Focus chain OC [auth K] Focus chain P [auth A] Focus chain PA [auth C] Focus chain PC [auth K] Focus chain Q [auth A] Focus chain QB [auth G] Focus chain QC [auth K] Focus chain RA [auth C] Focus chain RB [auth G] Focus chain RC [auth K] Focus chain S [auth A] Focus chain SB [auth G] Focus chain T [auth A] Focus chain TA [auth D] Focus chain TB [auth G] Focus chain TC [auth L] Focus chain UA [auth D] Focus chain V [auth A] Focus chain VA [auth D] Focus chain VB [auth H] Focus chain VC [auth L] Focus chain WA [auth D] Focus chain WB [auth H] Focus chain WC [auth L] Focus chain X [auth B] Focus chain XB [auth H] Focus chain XC [auth L] Focus chain ZB [auth H] Focus chain ZC [auth L]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.208 (Depositor), 0.207 (DCC)
R-Value Work: 0.171 (Depositor), 0.172 (DCC)
R-Value Observed: 0.175 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.408	α = 90
b = 187.412	β = 99.187
c = 60.421	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-09-27

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--

Revision History (Full details and data files)

Version 1.0: 2023-09-27
Type: Initial release
Version 1.1: 2026-03-04
Changes: Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.