8EEX

Cas7-11 in complex with Csx29


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

RNA-activated protein cleavage with a CRISPR-associated endopeptidase.

Strecker, J.Demircioglu, F.E.Li, D.Faure, G.Wilkinson, M.E.Gootenberg, J.S.Abudayyeh, O.O.Nishimasu, H.Macrae, R.K.Zhang, F.

(2022) Science 378: 874-881

  • DOI: https://doi.org/10.1126/science.add7450
  • Primary Citation of Related Structures:  
    8EEX, 8EEY

  • PubMed Abstract: 

    In prokaryotes, CRISPR-Cas systems provide adaptive immune responses against foreign genetic elements through RNA-guided nuclease activity. Recently, additional genes with non-nuclease functions have been found in genetic association with CRISPR systems, suggesting that there may be other RNA-guided non-nucleolytic enzymes. One such gene from Desulfonema ishimotonii encodes the TPR-CHAT protease Csx29, which is associated with the CRISPR effector Cas7-11. Here, we demonstrate that this CRISPR-associated protease (CASP) exhibits programmable RNA-activated endopeptidase activity against a sigma factor inhibitor to regulate a transcriptional response. Cryo-electron microscopy of an active and substrate-bound CASP complex reveals an allosteric activation mechanism that reorganizes Csx29 catalytic residues upon target RNA binding. This work reveals an RNA-guided function in nature that can be leveraged for RNA-sensing applications in vitro and in human cells.


  • Organizational Affiliation

    Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cas7-111,601Desulfonema ishimotoniiMutation(s): 2 
Gene Names: DENIS_1082
UniProt
Find proteins for A0A401FT36 (Desulfonema ishimotonii)
Explore A0A401FT36 
Go to UniProtKB:  A0A401FT36
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A401FT36
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Csx29751Desulfonema ishimotoniiMutation(s): 0 
Gene Names: DENIS_1081
UniProt
Find proteins for A0A401FT52 (Desulfonema ishimotonii)
Explore A0A401FT52 
Go to UniProtKB:  A0A401FT52
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A401FT52
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains LengthOrganismImage
crRNA36Desulfonema ishimotonii
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United States1DP1-HL141201
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United States2R01HG009761-05

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-16
    Type: Initial release
  • Version 1.1: 2022-12-07
    Changes: Database references