8EC6

Cryo-EM structure of the Glutaminase C core filament (fGAC)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Molecular mechanism of glutaminase activation through filamentation and the role of filaments in mitophagy protection.

Adamoski, D.Dias, M.M.Quesnay, J.E.N.Yang, Z.Zagoriy, I.Steyer, A.M.Rodrigues, C.T.da Silva Bastos, A.C.da Silva, B.N.Costa, R.K.E.de Abreu, F.M.O.Islam, Z.Cassago, A.van Heel, M.G.Consonni, S.R.Mattei, S.Mahamid, J.Portugal, R.V.Ambrosio, A.L.B.Dias, S.M.G.

(2023) Nat Struct Mol Biol 30: 1902-1912

  • DOI: https://doi.org/10.1038/s41594-023-01118-0
  • Primary Citation of Related Structures:  
    8EC6

  • PubMed Abstract: 

    Glutaminase (GLS), which deaminates glutamine to form glutamate, is a mitochondrial tetrameric protein complex. Although inorganic phosphate (Pi) is known to promote GLS filamentation and activation, the molecular basis of this mechanism is unknown. Here we aimed to determine the molecular mechanism of Pi-induced mouse GLS filamentation and its impact on mitochondrial physiology. Single-particle cryogenic electron microscopy revealed an allosteric mechanism in which Pi binding at the tetramer interface and the activation loop is coupled to direct nucleophile activation at the active site. The active conformation is prone to enzyme filamentation. Notably, human GLS filaments form inside tubulated mitochondria following glutamine withdrawal, as shown by in situ cryo-electron tomography of cells thinned by cryo-focused ion beam milling. Mitochondria with GLS filaments exhibit increased protection from mitophagy. We reveal roles of filamentous GLS in mitochondrial morphology and recycling.


  • Organizational Affiliation

    Brazilian Biosciences National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, Brazil.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform 2 of Glutaminase kidney isoform, mitochondrial
A, B, C, D, E
A, B, C, D, E, F, G, H
479Mus musculusMutation(s): 0 
Gene Names: GlsGls1Kiaa0838
EC: 3.5.1.2
UniProt & NIH Common Fund Data Resources
Find proteins for D3Z7P3 (Mus musculus)
Explore D3Z7P3 
Go to UniProtKB:  D3Z7P3
IMPC:  MGI:95752
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD3Z7P3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sao Paulo Research Foundation (FAPESP)Brazil2017/11766-5

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-20
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Database references
  • Version 1.2: 2023-11-01
    Changes: Database references
  • Version 1.3: 2023-12-27
    Changes: Database references