8E5H

Old Yellow Enzyme 5 (PcOYE5) from Pseudomonas chloritidismutans

• PDB DOI: https://doi.org/10.2210/pdb8E5H/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Stutzerimonas chloritidismutans AW-1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-08-22 Released: 2023-08-30 
• Deposition Author(s): Frkic, R.L., Jackson, C.J.
• Funding Organization(s): Australian Research Council (ARC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.27 Å
• R-Value Free: 0.156 
• R-Value Work: 0.136 
• R-Value Observed: 0.137 

Literature

Old Yellow Enzyme 5 (PcOYE5) from Pseudomonas chloritidismutans

Frkic, R.L., Jackson, C.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 40.08 kDa 
• Atom Count: 3,393 
• Modelled Residue Count: 368 
• Deposited Residue Count: 372 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH:flavin oxidoreductase	A	372	Stutzerimonas chloritidismutans AW-1	Mutation(s): 0  Gene Names: F753_20065
UniProt
Find proteins for V4RWU7 (Stutzerimonas chloritidismutans AW-1) Explore V4RWU7  Go to UniProtKB:  V4RWU7

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FNR	B [auth A]	1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL C17 H23 N4 O9 P YTNIXZGTHTVJBW-SCRDCRAPSA-N
CL	C [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.27 Å
• R-Value Free: 0.156 
• R-Value Work: 0.136 
• R-Value Observed: 0.137 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.417	α = 90
b = 70.09	β = 90
c = 97.877	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-08-30 
Deposition Author(s): Frkic, R.L., Jackson, C.J.

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Funding Organization	Location	Grant Number
Australian Research Council (ARC)	Australia	CE200100012

Revision History  

• Version 1.0: 2023-08-30
  Type: Initial release