8DTS

X-ray crystal structure of AFSSFN from chaperone DNAJB8.

PDB DOI: https://doi.org/10.2210/pdb8DTS/pdb

Classification: CHAPERONE
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2022-07-26 Released: 2024-01-31
Deposition Author(s): Boyer, D.R., Ryder, B., Sawaya, M.R., Joachimiak, L.A.
Funding Organization(s): National Institutes of Health/National Institute on Aging (NIH/NIA)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 0.75 Å
R-Value Free: 0.226
R-Value Work: 0.203
R-Value Observed: 0.205

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

X-ray crystal structure of peptide AFSSFN from chaperone DNAJB8.

Boyer, D.R., Ryder, B., Sawaya, M.R., Joachimiak, L.A.

To be published.

Macromolecule Content

Total Structure Weight: 8.06 kDa
Atom Count: 924
Modelled Residue Count: 72
Deposited Residue Count: 72
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNAJB8 peptide AFSSFN	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	6	Homo sapiens	Mutation(s): 0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 0.75 Å
R-Value Free: 0.226
R-Value Work: 0.203
R-Value Observed: 0.205
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.38	α = 90
b = 9.48	β = 90
c = 30.4	γ = 90.01

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
SHELXD	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-01-31

Deposition Author(s):

Joachimiak, L.A.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)	United States	--

Revision History (Full details and data files)

Version 1.0: 2024-01-31
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.