8DKF

Antibody DH1030.1 Fab fragment

PDB DOI: https://doi.org/10.2210/pdb8DKF/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2022-07-05 Released: 2023-07-12
Deposition Author(s): Gobeil, S., Acharya, P.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free: 0.274
R-Value Work: 0.239
R-Value Observed: 0.240

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

DH1030.1 glycan reactive Ab

Gobeil, S.M., Williams, W., Henderson, R.C., Janowska, K., Speakman, M., Huang, X., Beaudoin, E., Martin, M., Stalls, V., Manne, K., Mansouri, K., Edwards, R.J., Sempowski, G., Saunders, K., Wiehe, K., Haynes, B.F., Acharya, P.

To be published.

Macromolecule Content

Total Structure Weight: 98 kDa
Atom Count: 7,234
Modelled Residue Count: 884
Deposited Residue Count: 898
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DH1030.1 Heavy chain	A [auth H], C [auth A]	230	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
DH1030.1 Light chain	B [auth L], D [auth B]	219	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free: 0.274
R-Value Work: 0.239
R-Value Observed: 0.240
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.19	α = 90
b = 103.12	β = 90
c = 109.846	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-07-12

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	--

Revision History (Full details and data files)

Version 1.0: 2023-07-12
Type: Initial release
Version 1.1: 2023-08-16
Changes: Data collection
Version 1.2: 2023-10-25
Changes: Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.