8DIO

Deposited: 2022-06-29 Released: 2024-01-17
Deposition Author(s): Nguyen, E., Berman, A.J.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), American Cancer Society

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Nguyen, E., Berman, A.J.

To be published.

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
La ribonucleoprotein 1, translational regulator	A, B	151	Danio rerio	Mutation(s): 0 Gene Names: larp1
UniProt
Find proteins for A0A8M9P457 (Danio rerio) Explore A0A8M9P457 Go to UniProtKB: A0A8M9P457
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8M9P457
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
91P (Subject of Investigation/LOI) Query on 91P Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate C₂₀ H₃₀ N₈ O₁₈ P₃ MKNQXCMUSBQGFH-KPKSGTNCSA-O		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]
MY6 Query on MY6 Download Ideal Coordinates CCD File SDF format, chain D [auth B] MOL2 format, chain D [auth B]	D [auth B]	2-amino-7-methyl-1,7-dihydro-6H-purin-6-one C₆ H₇ N₅ O FZWGECJQACGGTI-UHFFFAOYSA-N		Interactions Focus chain D [auth B] Interactions & Density Focus chain D [auth B]