8DH7 | pdb_00008dh7

Cryo-EM structure of Saccharomyces cerevisiae Succinyl-CoA:acetate CoA-transferase (Ach1p)

• PDB DOI: https://doi.org/10.2210/pdb8DH7/pdb
• EM Map EMD-27431: EMDB EMDataResource

• Classification: TRANSFERASE
• Organism(s): Saccharomyces cerevisiae
• Mutation(s): No 


• Deposited: 2022-06-25 Released: 2022-07-20 
• Deposition Author(s): Godoy, A.S., Song, Y., Cheruvara, H., Quigley, A., Oliva, G.
• Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.99 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs

Godoy, A.S., Song, Y., Cheruvara, H., Quigley, A., Oliva, G.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 117.58 kDa 
• Atom Count: 8,274 
• Modeled Residue Count: 1,052 
• Deposited Residue Count: 1,052 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-CoA hydrolase	A [auth B], B [auth A]	526	Saccharomyces cerevisiae	Mutation(s): 0  EC: 3.1.2.1
UniProt
Find proteins for P32316 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32316  Go to UniProtKB:  P32316

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.99 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-07-20 
Deposition Author(s): Godoy, A.S., Song, Y., Cheruvara, H., Quigley, A., Oliva, G.

---

Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2013/07600-3

Revision History  

• Version 1.0: 2022-07-20
  Type: Initial release
  
• Version 1.1: 2024-02-14
  Changes: Data collection
• Version 1.2: 2025-05-21
  Changes: Data collection, Structure summary