8DAE | pdb_00008dae

Arabidopsis thaliana bifunctional dihydrofolate reductase-thymidylate synthase

PDB DOI: https://doi.org/10.2210/pdb8DAE/pdb

Classification: TRANSFERASE, OXIDOREDUCTASE
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-06-13 Released: 2023-06-21
Deposition Author(s): Bond, C.S., Haywood, J.
Funding Organization(s): Australian Research Council (ARC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.237 (Depositor), 0.240 (DCC)
R-Value Work:
0.202 (Depositor), 0.210 (DCC)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Arabidopsis thaliana bifunctional dihydrofolate reductase-thymidylate synthase

Bond, C.S., Haywood, J.

To be published.

Macromolecule Content

Total Structure Weight: 60.28 kDa
Atom Count: 3,803
Modeled Residue Count: 470
Deposited Residue Count: 536
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bifunctional dihydrofolate reductase-thymidylate synthase 1	A	536	Arabidopsis thaliana	Mutation(s): 0 Gene Names: THY-1, At2g16370, F16F14.13 EC: 1.5.1.3 (PDB Primary Data), 2.1.1.45 (PDB Primary Data)
UniProt
Find proteins for Q05762 (Arabidopsis thaliana) Explore Q05762 Go to UniProtKB: Q05762
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q05762
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.237 (Depositor), 0.240 (DCC)
R-Value Work: 0.202 (Depositor), 0.210 (DCC)

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.717	α = 90
b = 80.717	β = 90
c = 181.757	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-06-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Australian Research Council (ARC)	Australia	DE180101445
Australian Research Council (ARC)	Australia	DP190101048

Revision History (Full details and data files)

Version 1.0: 2023-06-21
Type: Initial release
Version 1.1: 2023-10-25
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.