Download MendeleyBifunctional Inhibition of Neutrophil Elastase and Cathepsin G by Eap2 from S. aureus
Gido, C.D., Herdendorf, T.J., Geisbrecht, B.V.To be published.
8D7K
Bifunctional Inhibition of Neutrophil Elastase and Cathepsin G by Eap2 from S. aureus
- PDB DOI: https://doi.org/10.2210/pdb8D7K/pdb
- Classification: HYDROLASE/INHIBITOR,PROTEIN BINDING
- Organism(s): Homo sapiens, Staphylococcus aureus subsp. aureus Mu50
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-06-07 Released: 2023-06-14
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.10 Å
- R-Value Free: 0.258
- R-Value Work: 0.184
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cathepsin G, C-terminal truncated form | A [auth C], D [auth F], G [auth I], J [auth L] | 223 | Homo sapiens | Mutation(s): 0 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P08311 (Homo sapiens) Explore P08311 Go to UniProtKB: P08311 | |||||
PHAROS: P08311 GTEx: ENSG00000100448 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P08311 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Extracellular Adherence Protein | 100 | Staphylococcus aureus subsp. aureus Mu50 | Mutation(s): 0 Gene Names: map, SAV1938 |  | |
UniProt | |||||
Find proteins for Q99QS1 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore Q99QS1 Go to UniProtKB: Q99QS1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q99QS1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Neutrophil elastase | C [auth A], F [auth D], I [auth G], L [auth J] | 218 | Homo sapiens | Mutation(s): 0 EC: 3.4.21.37 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P08246 (Homo sapiens) Explore P08246 Go to UniProtKB: P08246 | |||||
PHAROS: P08246 GTEx: ENSG00000197561 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P08246 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.10 Å
- R-Value Free: 0.258
- R-Value Work: 0.184
- R-Value Observed: 0.188
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 97.594 | α = 90 |
| b = 107.438 | β = 91.52 |
| c = 105.415 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-06-14 Deposition Author(s): Gido, C.D., Herdendorf, T.J., Geisbrecht, B.V.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35GM14852 |
Revision History (Full details and data files)
- Version 1.0: 2023-06-14
Type: Initial release - Version 1.1: 2023-10-25
Changes: Data collection, Refinement description
