The complex of Pre-mRNA-Processing Factor 19 (Prpf19) neoantigen KYLQVASHV Presented by H2-Kd
Custodio, J.M.F., Baker, B.M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
MHC class I heavy chain maturation peptide H-2K(D) | 276 | Mus musculus | Mutation(s): 0  Gene Names: H2-K1 | ||
UniProt | |||||
Find proteins for P01902 (Mus musculus) Explore P01902  Go to UniProtKB:  P01902 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01902 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 100 | Mus musculus | Mutation(s): 0  Gene Names: B2m | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01887 (Mus musculus) Explore P01887  Go to UniProtKB:  P01887 | |||||
IMPC:  MGI:88127 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01887 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Pre-mRNA-processing factor 19 | 9 | Mus musculus | Mutation(s): 0  EC: 2.3.2.27 | ||
UniProt | |||||
Find proteins for Q99KP6 (Mus musculus) Explore Q99KP6  Go to UniProtKB:  Q99KP6 | |||||
Entity Groups   | |||||
UniProt Group | Q99KP6 | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 115.44 | α = 90 |
b = 66.57 | β = 92.01 |
c = 56.96 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
REFMAC | refinement |
SCALEPACK | data scaling |
PHASER | phasing |
BUCCANEER | model building |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35GM118166 |