8D44 | pdb_00008d44

Cryo-electron microscopy structure of human kidney Fructose-bisphosphate aldolase B

PDB DOI: https://doi.org/10.2210/pdb8D44/pdb
EM Map EMD-27174: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2022-06-01 Released: 2022-11-16
Deposition Author(s): Lyu, M., Yu, E.W.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Cryo-electron microscopy structure of human kidney Fructose-bisphosphate aldolase B

Lyu, M., Yu, E.W.

To be published.

Macromolecule Content

Total Structure Weight: 158.08 kDa
Atom Count: 10,472
Modeled Residue Count: 1,372
Deposited Residue Count: 1,456
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructose-bisphosphate aldolase B	A [auth D], B [auth C], C [auth B], D [auth A]	364	Homo sapiens	Mutation(s): 0 Gene Names: ALDOB, ALDB EC: 4.1.2.13
UniProt & NIH Common Fund Data Resources
Find proteins for P05062 (Homo sapiens) Explore P05062 Go to UniProtKB: P05062
PHAROS: P05062 GTEx: ENSG00000136872
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P05062
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-11-16

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01 AI145069

Revision History (Full details and data files)

Version 1.0: 2022-11-16
Type: Initial release
Version 1.1: 2024-06-12
Changes: Data collection
Version 1.2: 2025-05-28
Changes: Data collection, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.