Download MendeleyPeptide 4.2C in complex with BRD4.2
Franck, C., Mackay, J.P.To be published.
8CV4
Peptide 4.2C in complex with BRD4.2
- PDB DOI: https://doi.org/10.2210/pdb8CV4/pdb
- Classification: TRANSCRIPTION
- Organism(s): Homo sapiens, synthetic construct
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-05-18 Released: 2023-05-24
- Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.93 Å
- R-Value Free: 0.255
- R-Value Work: 0.209
- R-Value Observed: 0.211
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| BRD4 protein | A, B | 122 | Homo sapiens | Mutation(s): 0 Gene Names: BRD4 |  |
UniProt | |||||
Find proteins for Q5BJ26 (Homo sapiens) Explore Q5BJ26 Go to UniProtKB: Q5BJ26 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5BJ26 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peptide 4.2F | C, D, E | 12 | synthetic construct | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACE Query on ACE | F [auth C], H [auth D], J [auth E] | ACETYL GROUP C2 H4 O IKHGUXGNUITLKF-UHFFFAOYSA-N |  | Ligand Interaction | |
| NH2 Query on NH2 | G [auth C], I [auth D], K [auth E] | AMINO GROUP H2 N QGZKDVFQNNGYKY-UHFFFAOYAF |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| ALY Query on ALY | C, D, E | L-PEPTIDE LINKING | C8 H16 N2 O3 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.93 Å
- R-Value Free: 0.255
- R-Value Work: 0.209
- R-Value Observed: 0.211
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.575 | α = 90 |
| b = 65.855 | β = 90 |
| c = 76.395 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-05-24 Deposition Author(s): Franck, C., Mackay, J.P.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Health and Medical Research Council (NHMRC, Australia) | Australia | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-05-24
Type: Initial release
