Download MendeleyCrystal Structure of the Carbamate Kinase from Pseudomonas aeruginosa
Kim, Y., Skarina, T., Mesa, N., Stogios, P., Savchenko, S., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
8CRV
Crystal Structure of the Carbamate Kinase from Pseudomonas aeruginosa
- PDB DOI: https://doi.org/10.2210/pdb8CRV/pdb
- Classification: TRANSFERASE
- Organism(s): Pseudomonas aeruginosa PAO1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-05-11 Released: 2022-08-10
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.196
- R-Value Work: 0.181
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Carbamate kinase | A | 313 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0 Gene Names: arcC, PA5173 EC: 2.7.2.2 |  |
UniProt | |||||
Find proteins for P13982 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore P13982 Go to UniProtKB: P13982 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13982 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| OO9 Query on OO9 | D [auth A] | oxidanyl dihydrogen phosphate H3 O5 P MPNNOLHYOHFJKL-UHFFFAOYSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | E [auth A], F [auth A], G [auth A], H [auth A], I [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| FMT Query on FMT | C [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.196
- R-Value Work: 0.181
- R-Value Observed: 0.182
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.56 | α = 90 |
| b = 56.56 | β = 90 |
| c = 250.37 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| xia2 | data scaling |
| HKL-3000 | phasing |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-08-10 Deposition Author(s): Kim, Y., Skarina, T., Mesa, N., Stogios, P., Savchenko, S., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-08-10
Type: Initial release
