8CQO

Crystal structure of Borrelia burgdorferi paralogous family 12 outer surface protein BBK01 (Se-Met data)

PDB DOI: https://doi.org/10.2210/pdb8CQO/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Borreliella burgdorferi B31
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-03-06 Released: 2024-03-13
Deposition Author(s): Brangulis, K., Drunka, L., Matisone, S., Akopjana, I., Tars, K.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free: 0.254
R-Value Work: 0.168
R-Value Observed: 0.172

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Borrelia burgdorferi outer surface protein BBK01

Brangulis, K., Drunka, L., Matisone, S., Akopjana, I., Tars, K.

To be published.

Macromolecule Content

Total Structure Weight: 63.76 kDa
Atom Count: 2,917
Modelled Residue Count: 361
Deposited Residue Count: 550
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipoprotein, putative	A, B	275	Borreliella burgdorferi B31	Mutation(s): 0 Gene Names: BB_K01
UniProt
Find proteins for O50805 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore O50805 Go to UniProtKB: O50805
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O50805
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free: 0.254
R-Value Work: 0.168
R-Value Observed: 0.172
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.44	α = 90
b = 52.72	β = 90.46
c = 94.991	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
Aimless	data scaling
SHELXDE	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-03-13

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	Latvia	lzp-2021/1-0068

Revision History (Full details and data files)

Version 1.0: 2024-03-13
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.