8CNI | pdb_00008cni

PHT1 in the outward facing conformation, bound to Sb27


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.35 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8CNI

This is version 1.2 of the entry. See complete history

Literature

Molecular basis of TASL recruitment by the peptide/histidine transporter 1, PHT1.

Custodio, T.F.Killer, M.Yu, D.Puente, V.Teufel, D.P.Pautsch, A.Schnapp, G.Grundl, M.Kosinski, J.Low, C.

(2023) Nat Commun 14: 5696-5696

  • DOI: https://doi.org/10.1038/s41467-023-41420-5
  • Primary Citation Related Structures: 
    8CNI

  • PubMed Abstract: 

    PHT1 is a histidine /oligopeptide transporter with an essential role in Toll-like receptor innate immune responses. It can act as a receptor by recruiting the adaptor protein TASL which leads to type I interferon production via IRF5. Persistent stimulation of this signalling pathway is known to be involved in the pathogenesis of systemic lupus erythematosus (SLE). Understanding how PHT1 recruits TASL at the molecular level, is therefore clinically important for the development of therapeutics against SLE and other autoimmune diseases. Here we present the Cryo-EM structure of PHT1 stabilized in the outward-open conformation. By combining biochemical and structural modeling techniques we propose a model of the PHT1-TASL complex, in which the first 16 N-terminal TASL residues fold into a helical structure that bind in the central cavity of the inward-open conformation of PHT1. This work provides critical insights into the molecular basis of PHT1/TASL mediated type I interferon production.


  • Organizational Affiliation
    • Centre for Structural Systems Biology (CSSB), Notkestraße 85, 22607, Hamburg, Germany.

Macromolecule Content 

  • Total Structure Weight: 90.57 kDa 
  • Atom Count: 5,718 
  • Modeled Residue Count: 742 
  • Deposited Residue Count: 829 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Solute carrier family 15 member 4A [auth B]581Gallus gallusMutation(s): 0 
Gene Names: SLC15A4
Membrane Entity: Yes 
UniProt
Find proteins for A0A8V0ZFZ8 (Gallus gallus)
Explore A0A8V0ZFZ8 
Go to UniProtKB:  A0A8V0ZFZ8
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A8V0ZFZ8
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Sybody 27B [auth A],
C
124Escherichia coliMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.35 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-27
    Type: Initial release
  • Version 1.1: 2024-02-28
    Changes: Source and taxonomy
  • Version 1.2: 2024-11-20
    Changes: Data collection, Structure summary