8CMP

DNA-binding bacterial histone protein HBB from Bdellovibrio bacteriovorus

PDB DOI: https://doi.org/10.2210/pdb8CMP/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Bdellovibrio bacteriovorus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-02-20 Released: 2024-03-06
Deposition Author(s): Hu, Y., Joiner, J.D., Albrecht, R., Hartmann, M.D.
Funding Organization(s): Max Planck Society

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.06 Å
R-Value Free: 0.169
R-Value Work: 0.142
R-Value Observed: 0.144

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Atomic resolution structure of a DNA-binding bacterial histone from Bdellovibrio bacteriovorus

Hu, Y.

To be published.

Macromolecule Content

Total Structure Weight: 7.19 kDa
Atom Count: 473
Modelled Residue Count: 58
Deposited Residue Count: 66
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CBFD_NFYB_HMF domain-containing protein	A	66	Bdellovibrio bacteriovorus	Mutation(s): 0 Gene Names: AZI86_06880
UniProt
Find proteins for A0A150WQJ8 (Bdellovibrio bacteriovorus) Explore A0A150WQJ8 Go to UniProtKB: A0A150WQJ8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A150WQJ8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.06 Å
R-Value Free: 0.169
R-Value Work: 0.142
R-Value Observed: 0.144
Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.474	α = 90
b = 56.345	β = 90
c = 26.695	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-03-06

Deposition Author(s):

Funding Organization	Location	Grant Number
Max Planck Society	Germany	--

Revision History (Full details and data files)

Version 1.0: 2024-03-06
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.