8CLQ

Zearalenone lactonase of Streptomyces coelicoflavus mutant H286Y in complex with hydrolyzed zearalenone


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.198 

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This is version 1.1 of the entry. See complete history


Literature

Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone.

Fruhauf, S.Puhringer, D.Thamhesl, M.Fajtl, P.Kunz-Vekiru, E.Hobartner-Gussl, A.Schatzmayr, G.Adam, G.Damborsky, J.Djinovic-Carugo, K.Prokop, Z.Moll, W.D.

(2024) ACS Catal 14: 3392-3410

  • DOI: https://doi.org/10.1021/acscatal.4c00271
  • Primary Citation of Related Structures:  
    8CLN, 8CLO, 8CLP, 8CLQ, 8CLT, 8CLU, 8CLV

  • PubMed Abstract: 

    Zearalenone (ZEN) is a mycoestrogenic polyketide produced by Fusarium graminearum and other phytopathogenic members of the genus Fusarium . Contamination of cereals with ZEN is frequent, and hydrolytic detoxification with fungal lactonases has been explored. Here, we report the isolation of a bacterial strain, Rhodococcus erythropolis PFA D8-1, with ZEN hydrolyzing activity, cloning of the gene encoding α/β hydrolase ZenA encoded on the linear megaplasmid pSFRL1, and biochemical characterization of nine homologues. Furthermore, we report site-directed mutagenesis as well as structural analysis of the dimeric ZenA Re of R. erythropolis and the more thermostable, tetrameric ZenA Scfl of Streptomyces coelicoflavus with and without bound ligands. The X-ray crystal structures not only revealed canonical features of α/β hydrolases with a cap domain including a Ser-His-Asp catalytic triad but also unusual features including an uncommon oxyanion hole motif and a peripheral, short antiparallel β-sheet involved in tetramer interactions. Presteady-state kinetic analyses for ZenA Re and ZenA Scfl identified balanced rate-limiting steps of the reaction cycle, which can change depending on temperature. Some new bacterial ZEN lactonases have lower K M and higher k cat than the known fungal ZEN lactonases and may lend themselves to enzyme technology development for the degradation of ZEN in feed or food.


  • Organizational Affiliation

    dsm-firmenich Animal Nutrition and Health R&D Center Tulln, Technopark 1, Tulln 3430, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Hydrolase
A, B, C, D
315Streptomyces coelicoflavusMutation(s): 1 
Gene Names: SMCF_1294
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.198 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.809α = 90
b = 129.867β = 90
c = 134.822γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Christian Doppler ForschungsgesellschaftAustriaFA743017
Austrian Research Promotion AgencyAustriaLaura Bassi Center for Optimised Structural Studies
Ministry of Education (MoE, Czech Republic)Czech RepublicINBIO - CZ.02.1.01/0.0/0.0/16_026/0008451
Ministry of Education (MoE, Czech Republic)Czech RepublicRECETOX RI LM2018121
Ministry of Education (MoE, Czech Republic)Czech RepublicELIXIR LM201813

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-28
    Type: Initial release
  • Version 1.1: 2024-03-20
    Changes: Database references