8CIL

Crystal structure of Coxiella burnetii Fic protein 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.188 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3.

Hopfner, D.Cichy, A.Pogenberg, V.Krisp, C.Mezouar, S.Bach, N.C.Grotheer, J.Zarza, S.M.Martinez, E.Bonazzi, M.Feige, M.J.Sieber, S.A.Schluter, H.Itzen, A.

(2023) Commun Biol 6: 1124-1124

  • DOI: https://doi.org/10.1038/s42003-023-05494-7
  • Primary Citation of Related Structures:  
    8CIL

  • PubMed Abstract: 

    The intracellular bacterial pathogen Coxiella burnetii evades the host response by secreting effector proteins that aid in establishing a replication-friendly niche. Bacterial filamentation induced by cyclic AMP (Fic) enzymes can act as effectors by covalently modifying target proteins with the posttranslational AMPylation by transferring adenosine monophosphate (AMP) from adenosine triphosphate (ATP) to a hydroxyl-containing side chain. Here we identify the gene product of C. burnetii CBU_0822, termed C. burnetii Fic 2 (CbFic2), to AMPylate host cell histone H3 at serine 10 and serine 28. We show that CbFic2 acts as a bifunctional enzyme, both capable of AMPylation as well as deAMPylation, and is regulated by the binding of DNA via a C-terminal helix-turn-helix domain. We propose that CbFic2 performs AMPylation in its monomeric state, switching to a deAMPylating dimer upon DNA binding. This study unveils reversible histone modification by a specific enzyme of a pathogenic bacterium.


  • Organizational Affiliation

    Institute of Biochemistry and Signal Transduction, University Medical Center Hamburg-Eppendorf (UKE), Martinistraße 52, 20246, Hamburg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Fic family protein
A, B
380Coxiella burnetiiMutation(s): 0 
Gene Names: CBU_0822
UniProt
Find proteins for Q83DB6 (Coxiella burnetii (strain RSA 493 / Nine Mile phase I))
Explore Q83DB6 
Go to UniProtKB:  Q83DB6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ83DB6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.188 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69.621α = 90
b = 124.378β = 98.134
c = 71.636γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
Auto-Rickshawphasing
MoRDaphasing
Cootmodel building
PHENIXrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-15
    Type: Initial release