8CIK

Altai wapiti (Cervus elaphus sibiricus) chymosin at 2.2 A resolution

PDB DOI: https://doi.org/10.2210/pdb8CIK/pdb

Classification: HYDROLASE
Organism(s): Cervus canadensis sibiricus
Expression System: Kluyveromyces lactis
Mutation(s): No

Deposited: 2023-02-09 Released: 2023-03-08
Deposition Author(s): Diusenova, S.E., Shevtsov, M.B., Borshchevskiy, V.I., Belenkaya, S.V., Kolybalov, D.S., Arkhipov, S.G., Volosnikova, E.A., Elchaninov, V.V., Shcherbakov, D.N.
Funding Organization(s): Ministry of Science and Higher Education of the Russian Federation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.22 Å
R-Value Free: 0.243
R-Value Work: 0.198
R-Value Observed: 0.201

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Altai wapiti (Cervus elaphus sibiricus) chymosin at 2.2 A resolution

Belenkaya, S.V., Diusenova, S.E., Shevtsov, M.B., Borshchevskiy, V.I., Arkhipov, S.G., Kolybalov, D.S., Volosnikova, E.A., Elchaninov, V.V., Shcherbakov, D.N.

To be published.

Macromolecule Content

Total Structure Weight: 35.78 kDa
Atom Count: 2,605
Modelled Residue Count: 323
Deposited Residue Count: 323
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chymosin	A	323	Cervus canadensis sibiricus	Mutation(s): 0 Gene Names: CYM EC: 3.4.23.4
UniProt
Find proteins for A0A7D3Q7Y7 (Cervus canadensis sibiricus) Explore A0A7D3Q7Y7 Go to UniProtKB: A0A7D3Q7Y7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A7D3Q7Y7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.22 Å
R-Value Free: 0.243
R-Value Work: 0.198
R-Value Observed: 0.201
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 142.39	α = 90
b = 41.63	β = 98.31
c = 54.55	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-03-08

Deposition Author(s):

Diusenova, S.E.

Borshchevskiy, V.I.

Belenkaya, S.V.

Kolybalov, D.S.

Volosnikova, E.A.

Elchaninov, V.V.

Shcherbakov, D.N.

Funding Organization	Location	Grant Number
Ministry of Science and Higher Education of the Russian Federation	Russian Federation	075-15-2021-1355

Revision History (Full details and data files)

Version 1.0: 2023-03-08
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.