8C9K | pdb_00008c9k

Structure of Mpox virus poxin

• PDB DOI: https://doi.org/10.2210/pdb8C9K/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Monkeypox virus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-01-23 Released: 2023-05-31 
• Deposition Author(s): Duchoslav, V., Boura, E.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.72 Å
• R-Value Free: 
  0.228 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.214 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.214 (Depositor) 

Starting Model: experimental

Literature

Structure of Mpox virus poxin

Duchoslav, V., Boura, E.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 90.04 kDa 
• Atom Count: 7,079 
• Modeled Residue Count: 776 
• Deposited Residue Count: 792 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MPXVgp165	A, B, C, D	198	Monkeypox virus	Mutation(s): 0  Gene Names: MPXV-M5312_HM12_Rivers-164
UniProt
Find proteins for A0A7H0DNF0 (Monkeypox virus) Explore A0A7H0DNF0  Go to UniProtKB:  A0A7H0DNF0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.72 Å
• R-Value Free:  0.228 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.214 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.214 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.43	α = 90
b = 94.13	β = 105.26
c = 94.67	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-05-31 
Deposition Author(s): Duchoslav, V., Boura, E.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2023-05-31
  Type: Initial release
  
• Version 1.1: 2024-06-19
  Changes: Data collection